View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19891_low_5 (Length: 447)
Name: NF19891_low_5
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19891_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 52392901 - 52392532
Alignment:
| Q |
1 |
attaacattattcaatgaagaattataagtggcaaaataaaattagcgcccatataccaaccaaaccaacaattacattcgtgtcaccttnnnnnnnnnn |
100 |
Q |
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| T |
52392901 |
attaacattattcaatgcagaattataagtggcaaaataaaattagcgcccatataccaaccaa-----caattacattcgggtcacctgaaaacaaaac |
52392807 |
T |
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| Q |
101 |
nnnnnngaaattacattcatggatatgttacatttatgtaaagggtggaattagatttagatagatcattcagatcaagcactaattccatgtcctgtgt |
200 |
Q |
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| T |
52392806 |
aaaaaagaaattacattcatggatatgttacatttatgtaaagggtggaattagatttagatagatcattcagatcaagcactaattccatgtcctgtgt |
52392707 |
T |
|
| Q |
201 |
ttaattttgatgatcccaagttggctacgtgatactgcgatacatacttgctggtaggagcttccatcactggaggttcattaagaaacgcccagttgct |
300 |
Q |
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| T |
52392706 |
ttaattttgatgatcccaagttggctacgtgatactgcgatgcatacttgctggtaggagcttccatcactggaggttcattaagaaacgcccagttgct |
52392607 |
T |
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| Q |
301 |
cttggtccacctgcactcacccaatgcaaccatatccaaattcaatataaagtttatatattccaaattaaaagt |
375 |
Q |
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| T |
52392606 |
cttggtccacctgcactcacccaatgcaaccatatccaaattcaatataaagtttatatattccaaattaaaagt |
52392532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 372 - 432
Target Start/End: Complemental strand, 52392505 - 52392445
Alignment:
| Q |
372 |
aagtagttgaattggaacattgattttttaaaagatggaccgaaattcgaatcaaacaact |
432 |
Q |
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| T |
52392505 |
aagtagttgaattggaacattgattttttaaaagatggaccgaaattcgaatcaaacaact |
52392445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 7117203 - 7117127
Alignment:
| Q |
243 |
catacttgctggtaggagcttccatcactggaggttcattaagaaacgcccagttgctcttggtccacctgcactca |
319 |
Q |
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|||||||||||| | ||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||||||||||||| |
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| T |
7117203 |
catacttgctggatgcagcttccattactggtggctcattcagaaatgcccagttactcttagtccacctgcactca |
7117127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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