View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19892_high_1_N (Length: 355)
Name: NF19892_high_1_N
Description: NF19892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19892_high_1_N |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 164 - 355
Target Start/End: Original strand, 6862425 - 6862616
Alignment:
| Q |
164 |
accttaggatatgccgacgcttggtatcacattaaaaacagacttgtgactgtaaagtaaaggagataatggttgtttatgtggtgtcattagcacattt |
263 |
Q |
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| T |
6862425 |
accttaggatatgccgacgcttggtattacattaaaaacagacttgtgactgtaaagtaaaggagataatggttgtttatgtggtgtcattagcacattt |
6862524 |
T |
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| Q |
264 |
gcttataattttctctctttaaattgatactattatatagtatgctgcacttaaatattagtgtgccagattgacatacgttgccattttga |
355 |
Q |
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| T |
6862525 |
gcttataattttctctctttaaattgatactattatatagtatgctgcacttaaatattagtgtgccagattgatatacgttgccattttga |
6862616 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 6857503 - 6857605
Alignment:
| Q |
168 |
taggatatgccgacgcttggtatcacatta-aaaacagacttgtgactgtaaagtaaaggagataatggttgtttatgtggtgtcattagcacatttgct |
266 |
Q |
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| T |
6857503 |
taggatacgccgacggttggtatcacattagaaaacagattagtgacggtaaagtgatggtgataatagttttttatgtggtgtcattagcacatttgct |
6857602 |
T |
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| Q |
267 |
tat |
269 |
Q |
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| T |
6857603 |
tat |
6857605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 29150933 - 29151094
Alignment:
| Q |
8 |
caccacagaccacctaacctttcatccaccagcattgcatccccgccgctgccgccactgctgctttcattcacaagcatcggttcgcatctccgttgag |
107 |
Q |
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| T |
29150933 |
caccaccgaccacctaacctttcatccaccagcattgcatccccgccgctgccgccactgctgctttcattcacaagcatcggttcgcatctccgttgag |
29151032 |
T |
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| Q |
108 |
tatgagtgatcctccggttcaacccaatgcagagtcaccggtaagcctctctgacaacctta |
169 |
Q |
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| T |
29151033 |
tatgagtgatcctccagctcaacccaatgcagagtcaccggtaagcctctctgacaacctta |
29151094 |
T |
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