View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19892_low_1 (Length: 712)
Name: NF19892_low_1
Description: NF19892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19892_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 666; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 14 - 695
Target Start/End: Original strand, 10971953 - 10972634
Alignment:
| Q |
14 |
caaagggatagacaacataccgatgcaaagtggttaacatcgcgatgatgtgcttcatcagctctgacaacctctacaacatcccttaaagtagagtttt |
113 |
Q |
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| T |
10971953 |
caaagggatagacaacataccgaagcaaaatggttaacatcgcgatgatgtgcttcatcagctctgacaacctctacaacatcccttaaagtagagtttt |
10972052 |
T |
|
| Q |
114 |
ggggaagctgccaatagtcaatagcaatagctggagcaggaacgttttcgatgttgcctttatcaagttccttgagaaactcagtgtatgagtgaatagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10972053 |
ggggaagctgccaatagtcaatagcaatagctggagcaggaacgttttcgatgttgcctttatcaagttccttgagaaactcagtgtatgagtgaatagc |
10972152 |
T |
|
| Q |
214 |
ttcctcctcaaggtaaccaaccatacggtgtgcaaattttggtgagagcaaatagcctaagaaataagcattgaagaaaacaccttggacagttatgacc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10972153 |
ttcctcctcaaggtaaccaaccatacggtgtgcaaattttggtgagagcaaatagcctaagaaataagcattgaagaaaacaccttggacagttatgacc |
10972252 |
T |
|
| Q |
314 |
agagcacgttcataccactttggttttgccacttccatgaaagtcattaggtgcatgcgctcgttctcggcttcttctagcaatgctttgatccatccac |
413 |
Q |
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| T |
10972253 |
agagcacgttcataccactttggttttgccacttccatgaaagtcattagatgcatgcgctcgttctcggcttcttctagcaatgctttgatccatccac |
10972352 |
T |
|
| Q |
414 |
cactttgctcaaatcggcgcaatgatttgcagtgaagcagcattcctcctaccatgccagggacagcagctactgtctcaagcatcattgctcggcatcc |
513 |
Q |
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| T |
10972353 |
cactttgctcaaatcggcgcaatgatttgcagtgaagcagcattcctcctaccatcccagggacagcagctactgtctcaagcatcattgctcggcatcc |
10972452 |
T |
|
| Q |
514 |
ataccttctctgtttcaattgaatacaacataagttagaaattacataaaatacttttgatcttggtgttagtaactaaaagaaactttgaacataattt |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10972453 |
ataccttctctgtttcaattgaatacaacataagttagaaattacataaaatacttttgatcttggtgttagtaactaaaagaaactttgaacataattt |
10972552 |
T |
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| Q |
614 |
ataggatagtaagttcatcaaggggagaacatattactataaaattcaattaaaatttcattcaaaccaaaaggtaaaaaac |
695 |
Q |
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| T |
10972553 |
ataggatagtaagttcatcaaggggagaacatattactataaaattcaattaaaatttcattcaaaccaaaaggtaaaaaac |
10972634 |
T |
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Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 355 - 525
Target Start/End: Complemental strand, 37469527 - 37469357
Alignment:
| Q |
355 |
agtcattaggtgcatgcgctcgttctcggcttcttctagcaatgctttgatccatccaccactttgctcaaatcggcgcaatgatttgcagtgaagcagc |
454 |
Q |
| |
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||||||||||||||| | ||| ||||| |||||||| ||||||||||||| ||| |||||||| |||| |||| || | ||| ||| ||| | |||| |
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| T |
37469527 |
agtcattaggtgcatcctctcattctctgcttcttcaagcaatgctttgacccaaccaccactatgctgaaattttcggagtgacttgaggtgcaacagc |
37469428 |
T |
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| Q |
455 |
attcctcctaccatgccagggacagcagctactgtctcaagcatcattgctcggcatccataccttctctg |
525 |
Q |
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|| ||||| ||||| ||||||||||| || ||||| |||||||||||||| ||||| ||||| | |||||| |
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| T |
37469427 |
atccctccaaccattccagggacagctgcaactgtttcaagcatcattgcacggcaaccataacgtctctg |
37469357 |
T |
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