View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19892_low_5 (Length: 220)
Name: NF19892_low_5
Description: NF19892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19892_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 3215933 - 3216042
Alignment:
| Q |
17 |
tactatacatcattataattttttcctcatctttttgcagcaattatagggaagttttctaaacgtacatttgcataagttttggccgttgggttttggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215933 |
tactatacatcattataattttttcctcatctttttgcagcaattatacggaagttttctaaacgtacatttgcataagttttggccgttgggttttggt |
3216032 |
T |
|
| Q |
117 |
gatgagaatg |
126 |
Q |
| |
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|||||||||| |
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| T |
3216033 |
gatgagaatg |
3216042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 34011358 - 34011250
Alignment:
| Q |
17 |
tactatacatcattataattttttcctcatctttttgcagcaattatagggaagttttctaaacgtacatttgcataagttttggccgttgggttttggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34011358 |
tactatacatcattataattttttcctcatctttttgcagcaattatagggaag-tttctaaacgtacatttgcataagttttggccgttgggttttggt |
34011260 |
T |
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| Q |
117 |
gatgagaatg |
126 |
Q |
| |
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|||||||||| |
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| T |
34011259 |
gatgagaatg |
34011250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 33148700 - 33148592
Alignment:
| Q |
17 |
tactatacatcattataattttttcctcatctttttgcagcaattatagggaagttttctaaacgtacatttgcataagttttggccgttgggttttggt |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33148700 |
tactatacatcattataattttttcctcatctttttgcagcaattatagggaag-tttctaaacgtacatttgcataagttttggccgttgggttttggt |
33148602 |
T |
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| Q |
117 |
gatgagaatg |
126 |
Q |
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|||||||||| |
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| T |
33148601 |
gatgagaatg |
33148592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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