View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_high_13 (Length: 335)
Name: NF19893_high_13
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 54 - 319
Target Start/End: Complemental strand, 20582264 - 20581992
Alignment:
| Q |
54 |
gagagtttgtggtttggtgtgccaattgccacgtggccggtctatgcagagcaacaaattaatgcat-------ggttagggaattgggattagcggtgg |
146 |
Q |
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| T |
20582264 |
gagagtttgtggtttggtgtgccaattgccacgtggccggtctatgcagagcaacaaatgaatgcattccagatggttagggaattgggattagcagtgg |
20582165 |
T |
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| Q |
147 |
agattaggctggattatagggtgggtggggatctggtgttggcagaagaagttaagaatggtagtagtaccttgatgaacaatagtgatgagattaggag |
246 |
Q |
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| T |
20582164 |
agattaggctggattatagggtgggtggggatctggtgttggcagaagaagttaagaatggtgttagtaccttgatgaacaatagtgatgagattaggag |
20582065 |
T |
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| Q |
247 |
gaaggtaaaagaaatgagtgaaaagtgtaaggttagtttgatggagaatggatcatcttataccaaccttatg |
319 |
Q |
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| T |
20582064 |
gaaggtaaaagaaatgagtgaaaagtgtaaggttagtttgatggagaatggatcatcttataccaaccttatg |
20581992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 20563101 - 20562839
Alignment:
| Q |
54 |
gagagtttgtggtttggtgtgccaattgccacgtggccggtctatgcagagcaacaaattaatgcat-------ggttagggaattgggattagcggtgg |
146 |
Q |
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| T |
20563101 |
gagagtttgtggtatggtgtgccaattgccacgtggccagtttatgcggagcaacaaatgaatgcattcgagatggttagggaatcgggactagccgtgg |
20563002 |
T |
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| Q |
147 |
agattaggctggattatagggtgggtggggatctggtgttggcagaagaagttaagaatggtagtagtaccttgatgaacaatagtgatgagattaggag |
246 |
Q |
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| T |
20563001 |
agattaggttggattatagggtgggtggggatttggtgcaggcagaagaagtcaagaatggtgtaactaccttgatgaacaatagtcatgagattaggag |
20562902 |
T |
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| Q |
247 |
gaaggtaaaagaaatgagtgaaaagtgtaaggttagtttgatggagaatggatcatcttatac |
309 |
Q |
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| T |
20562901 |
gaaggttaaagaaatgagtgaaaagtgtagatttgctttgatggataatggatcatcttatac |
20562839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 54 - 319
Target Start/End: Complemental strand, 17781919 - 17781647
Alignment:
| Q |
54 |
gagagtttgtggtttggtgtgccaattgccacgtggccggtctatgcagagcaacaaattaatgc-------atggttagggaattgggattagcggtgg |
146 |
Q |
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| T |
17781919 |
gagagtttgtggtatggtgtgccaattgctacgtggccggtgtatgcagagcaacaaatgaacgcgtttcaaatggttagagaattgggattagcagtgg |
17781820 |
T |
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| Q |
147 |
agattaggctggattatagggtgggtggggatctggtgttggcagaagaagttaagaatggtagtagtaccttgatgaacaatagtgatgagattaggag |
246 |
Q |
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| T |
17781819 |
agattaggttggattatcgtgtgggtggagatttggtacaggcagaagaagttgaaaatggtgttcgtacattgatgaaccttagtgatgagattaggag |
17781720 |
T |
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| Q |
247 |
gaaggtaaaagaaatgagtgaaaagtgtaaggttagtttgatggagaatggatcatcttataccaaccttatg |
319 |
Q |
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| T |
17781719 |
gaaggtaaaagatatgagagaaaagtgtagagttgctttgatggagaacggatcgtcttatactaaccttatg |
17781647 |
T |
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