View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_high_14 (Length: 331)
Name: NF19893_high_14
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 18783710 - 18783395
Alignment:
| Q |
1 |
gttttatctcaaacatttcaaatatctgacgaaatttgcaatgtcaacnnnnnnnnctaagatttggtaccgatccatatagacagtgaaccgtgtttgg |
100 |
Q |
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| T |
18783710 |
gttttatctcaaacatttcaaatatctgatgaaatttgcaatgtcaacaaaaaaaactaagatttggtaccgatccatatagacagtgaaccgtgtttgg |
18783611 |
T |
|
| Q |
101 |
atcataatccggaagaccacgctgtttccttatgaatgacataattttatgttcaccttctccaggaacattagcatcagataaaattacctaagtcaaa |
200 |
Q |
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| T |
18783610 |
atcataatctggaagaccacgctgtttccttatgaatgacataactttatgttcaccttctccaggaacattagcatcagataaaattacctaagtcaaa |
18783511 |
T |
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| Q |
201 |
aaacattaaccaaattaataaacaatgaaatactactactagcttaataatgtagaagcaagtcaataatcaattatttataataatgttaaaaaagagt |
300 |
Q |
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| T |
18783510 |
aaacattaaccaaattaataaacaatgaaatactactactagcttaataatgtagaaacaagtcaataatcaattatttataataatgttaaaaaagagt |
18783411 |
T |
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| Q |
301 |
gattgatggtgttatt |
316 |
Q |
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|||||||||||||||| |
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| T |
18783410 |
gattgatggtgttatt |
18783395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 70 - 191
Target Start/End: Complemental strand, 22872864 - 22872743
Alignment:
| Q |
70 |
ccgatccatatagacagtgaaccgtgtttggatcataatccggaagaccacgctgtttccttatgaatgacataattttatgttcaccttctccaggaac |
169 |
Q |
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|||||| ||||||||||||||||||| || |||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||| |||| |
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| T |
22872864 |
ccgatcaatatagacagtgaaccgtgattagatcataatcaagaagaccacgttgtttgcttatgaatgacataattttatgttccccttctccatgaac |
22872765 |
T |
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| Q |
170 |
attagcatcagataaaattacc |
191 |
Q |
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| T |
22872764 |
attagcatcagatataattacc |
22872743 |
T |
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