View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_high_19 (Length: 276)
Name: NF19893_high_19
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_high_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 19172004 - 19172267
Alignment:
| Q |
13 |
aatatcaacaagaacacttctccttaacctatttgcataaagaacaacactaacaaactcttctatgtaaaccctaacatcatttcccaaaacagctttc |
112 |
Q |
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| T |
19172004 |
aatatcaacaagaacacttctccttaacctatttgcataaagaacaacactaacaaactcttctatgtaaaccctaacatcatttcccaaaacaactttc |
19172103 |
T |
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| Q |
113 |
cctttattatcaccgcgatctttacacgaaaaccagtcaccaacaacgtgttcaacgaaacagccttccgcgcgtgtaagcctatcgttaagtgttggaa |
212 |
Q |
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| T |
19172104 |
cctttattatcaccgcgatctttacacgaaaaccagtcaccaacaacgtttttaatgaaacagccttccgcgcgtgtaagcctatcgttaagcgttggaa |
19172203 |
T |
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| Q |
213 |
cgatggacttcaaaccgcactctatttgttccatacgtgttcttagggtttctgatggattcct |
276 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
19172204 |
cgatggacttcaaaccgcactctatttgctccatacgtgttattagggtttctgatggattcct |
19172267 |
T |
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