View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_high_22 (Length: 256)
Name: NF19893_high_22
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 2 - 253
Target Start/End: Complemental strand, 40724431 - 40724180
Alignment:
| Q |
2 |
gtgaaaagagaggatgaagaaaggcttgatgaagtcggttatgatgatgtgggtggttttaggaagcaaatggcacagatccgtgagttggtcgagcttc |
101 |
Q |
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| T |
40724431 |
gtgaaaagagaggatgaagaaaggcttgatgaagtcggttatgatgatgtgggtggttttaggaagcaaatggcacagatccgtgagttggtcgagcttc |
40724332 |
T |
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| Q |
102 |
cacaactttttaagtcaattggtgtgaaaccacccaaaggaatttttctatatggacccccaggttctggaaagacattaatagcaagagcagttgctaa |
201 |
Q |
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| T |
40724331 |
cacaactttttaagtcaattggtgtgaaaccacccaaaggaatttttctatatggacccccaggttctggaaagacattaatagcaagagctgttgctaa |
40724232 |
T |
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| Q |
202 |
tgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaa |
253 |
Q |
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| T |
40724231 |
tgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaa |
40724180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 40665622 - 40665886
Alignment:
| Q |
1 |
tgtgaaaagagaggatgaagaaaggcttgatgaagtcggttatgatgatgtgggtggttttaggaagcaaatggcacagatccgtgagttggtcgagctt |
100 |
Q |
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| T |
40665622 |
tgtgaaaagagatgatgaagaaagacttgatgaagttggttatgatgatgtgggtggtgttaggaagcaaatggcacagattcgcgagttggtcgagctt |
40665721 |
T |
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| Q |
101 |
cca------------caactttttaagtcaattggtgtgaaaccacccaaaggaatttttctatatggacccccaggttctggaaagacattaatagcaa |
188 |
Q |
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| T |
40665722 |
ccacttaggcatccacaactttttaagtcaattggtgcgaaagcacctaaaggaattttgctttctggacccccaggtaccggaaagacattaatagcaa |
40665821 |
T |
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| Q |
189 |
gagcagttgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaa |
253 |
Q |
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| T |
40665822 |
gagctattgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaa |
40665886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 249
Target Start/End: Original strand, 27977144 - 27977293
Alignment:
| Q |
100 |
tccacaactttttaagtcaattggtgtgaaaccacccaaaggaatttttctatatggacccccaggttctggaaagacattaatagcaagagcagttgct |
199 |
Q |
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| T |
27977144 |
tccacaattattcaagtctattggtgtgaagccaccaaaagggattttgttgtatggaccccctggatctggtaagactttaattgcacgagctgttgca |
27977243 |
T |
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| Q |
200 |
aatgaaactggagctttcttcttttgtattaatggaccagagattatgtc |
249 |
Q |
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| T |
27977244 |
aatgaaactggtgctttctttttctgtatcaatggtcctgagatcatgtc |
27977293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 41093108 - 41093011
Alignment:
| Q |
152 |
tatggacccccaggttctggaaagacattaatagcaagagcagttgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtc |
249 |
Q |
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| T |
41093108 |
tatggaccccctggttctggaaagactttaattgctcgggcagttgcaaatgaaacaggtgccttctttttctgcattaatggccctgagataatgtc |
41093011 |
T |
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