View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_high_24 (Length: 251)
Name: NF19893_high_24
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 38133507 - 38133285
Alignment:
| Q |
19 |
tctttgtattaattttggtaacatttctcaaaacaaggaagaggtatacagatttttcaacatatgtgcttaatcagttaagtaatcaataaaattggca |
118 |
Q |
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| T |
38133507 |
tctttgtattaattttggtaacatttctcaaaacaaggaagaggtatacagatttttcaacatatgtgcttaatcagttaagtaatcaataaaattggca |
38133408 |
T |
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| Q |
119 |
ccagcagtaccaaattagtatcatcgatcatctatatataatatggtctaatgttaacatcagtaatcgaagaaagaaaataataagaaaagagattttc |
218 |
Q |
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| T |
38133407 |
ccagcagtaacaaattagtatcatc-atgagctatatataatatggtctaatgttaacatcagtaatcgcagaaagaaaataataagaaaagagattttc |
38133309 |
T |
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| Q |
219 |
taaccttggtagtagtagtataat |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
38133308 |
taaccttggtagtagtagtataat |
38133285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 38139854 - 38139709
Alignment:
| Q |
83 |
tgtgcttaatcagttaagtaatcaataaaattggcaccagcagtaccaaattagtatcatcgatcatctatatataatatggtctaatgttaacatcagt |
182 |
Q |
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|||||| |||||||||| ||||||||||||||| || || |||| ||||||| || | |||||||||||||| ||| ||||||||||| |||||| |
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| T |
38139854 |
tgtgctcaatcagttaattaatcaataaaattgccataagaagtaacaaattaata----ccatcatctatatatattatagtctaatgtta--atcagt |
38139761 |
T |
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| Q |
183 |
aatcgaagaaagaaaataataagaaaagagattttctaaccttggtagtagta |
235 |
Q |
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|||| |||||||||| ||||||||||||| | ||| ||||||||||||||| |
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| T |
38139760 |
aatcacagaaagaaaaacataagaaaagaga-tatctgaccttggtagtagta |
38139709 |
T |
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