View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19893_high_28 (Length: 236)

Name: NF19893_high_28
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19893_high_28
NF19893_high_28
[»] scaffold0471 (1 HSPs)
scaffold0471 (127-205)||(11283-11361)
[»] chr4 (2 HSPs)
chr4 (127-205)||(24126680-24126758)
chr4 (136-205)||(24685508-24685578)
[»] chr2 (1 HSPs)
chr2 (127-205)||(25649492-25649570)
[»] chr6 (1 HSPs)
chr6 (136-205)||(9306644-9306714)
[»] chr1 (1 HSPs)
chr1 (136-205)||(49383996-49384066)
[»] chr7 (1 HSPs)
chr7 (166-205)||(15814875-15814914)


Alignment Details
Target: scaffold0471 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 11361 - 11283
Alignment:
Q  127 ctcaaacttaatacgagtgtgttgttgcttgtagtgttatcaaattcaaaactgaaactattatggagttgttgcttga 205  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  11361 ctcaaacttaatacgagtgtgttgttgcttgatgtgttatcaaattcaaaactgaaactattgtggggttcttgcttga 11283  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 24126758 - 24126680
Alignment:
Q  127 ctcaaacttaatacgagtgtgttgttgcttgtagtgttatcaaattcaaaactgaaactattatggagttgttgcttga 205  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  24126758 ctcaaacttaatacgagtgtgttgttgcttgatgtgttatcaaattcaaaactgaaactattgtggggttcttgcttga 24126680  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 24685578 - 24685508
Alignment:
Q  136 aatacgagtgtgttgttgcttg-tagtgttatcaaattcaaaactgaaactattatggagttgttgcttga 205  Q
    |||||||||||||||||||||| | | ||||||||||| ||||||||||||||| ||| ||||||||||||    
T  24685578 aatacgagtgtgttgttgcttgattgagttatcaaatttaaaactgaaactattgtggggttgttgcttga 24685508  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 25649492 - 25649570
Alignment:
Q  127 ctcaaacttaatacgagtgtgttgttgcttgtagtgttatcaaattcaaaactgaaactattatggagttgttgcttga 205  Q
    |||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||| ||| ||||||||||||    
T  25649492 ctcaaacttaatacgagtgtgttgttgcttgatgtgttaccaaattcaaaactgaaactattgtggggttgttgcttga 25649570  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 9306644 - 9306714
Alignment:
Q  136 aatacgagtgtgttgttgcttg-tagtgttatcaaattcaaaactgaaactattatggagttgttgcttga 205  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  9306644 aatacgagtgtgttgttgcttgattgtgttatcaaattcaaaactgaaactattgtggggttgttgcttga 9306714  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 49383996 - 49384066
Alignment:
Q  136 aatacgagtgtgttgttgcttg-tagtgttatcaaattcaaaactgaaactattatggagttgttgcttga 205  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  49383996 aatacgagtgtgttgttgcttgattgtgttatcaaatttaaaactgaaactattgtggggttgttgcttga 49384066  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 15814914 - 15814875
Alignment:
Q  166 tcaaattcaaaactgaaactattatggagttgttgcttga 205  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  15814914 tcaaattcaaaactgaaactattttggggttgttgcttga 15814875  T

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