View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_high_30 (Length: 223)
Name: NF19893_high_30
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_high_30 |
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| [»] scaffold0471 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 24127208 - 24127261
Alignment:
| Q |
152 |
agggagggagaggatggccacgtgaatgagaagagatgaaaaagaattaattgag |
206 |
Q |
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| T |
24127208 |
agggagggagag-atggccacgtgaatgagaagagatgaaaaggaattaattgag |
24127261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 24686153 - 24686193
Alignment:
| Q |
166 |
tggccacgtgaatgagaagagatgaaaaagaattaattgag |
206 |
Q |
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| T |
24686153 |
tggccacgtgaatgagaagagatgaaaaggaattaattgag |
24686193 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 25649031 - 25648978
Alignment:
| Q |
152 |
agggagggagaggatggccacgtgaatgagaagagatgaaaaagaattaattga |
205 |
Q |
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| T |
25649031 |
agggagggagaggatggtcacgtgaatgagaagagattaaaaggaattaattga |
25648978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0471 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0471
Description:
Target: scaffold0471; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 11812 - 11863
Alignment:
| Q |
152 |
agggagggagaggatggccacgtgaatgagaagagatgaaaaagaattaattg |
204 |
Q |
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| T |
11812 |
agggagggagag-atggccacgtgaatgagaagagatgaaaaggaattaattg |
11863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 49383423 - 49383383
Alignment:
| Q |
166 |
tggccacgtgaatgagaagagatgaaaaagaattaattgag |
206 |
Q |
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| T |
49383423 |
tggccacgtgaatgagaagagatgaaaaggaattaattgag |
49383383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 9306054 - 9305997
Alignment:
| Q |
152 |
agggagggagaggatgg---ccacgtgaatgagaagagatgaaaaagaattaattgag |
206 |
Q |
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| T |
9306054 |
agggagggagaggatggtggccacgtgaatgagaagaaatgaaaaggaattaattgag |
9305997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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