View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_high_31 (Length: 213)
Name: NF19893_high_31
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 42839933 - 42840119
Alignment:
| Q |
19 |
atgtacccacacccttcatcatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccattagcgctatcaaatcct |
118 |
Q |
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| T |
42839933 |
atgtacccacacccttcatcatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccattagcgctatcaaatcct |
42840032 |
T |
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| Q |
119 |
ccaaactcaataacccatcaccatcagaatccaatgcctcaatagcaatctccacttctttcaattgaaactctccgatattcttcg |
205 |
Q |
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| T |
42840033 |
ccaaactcaataacccatcaccatcagaatccaatgcctcaatagcaatctccacttctttcaattgaaactctccgctaatcttcg |
42840119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 42849734 - 42849904
Alignment:
| Q |
25 |
ccacacccttcatcatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccattagcgctatcaaatcctccaaac |
124 |
Q |
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| T |
42849734 |
ccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccataagctttatcaaatcctccaaac |
42849833 |
T |
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| Q |
125 |
tcaataacccatcaccatcagaatccaatgcctcaatagcaatctccacttctttcaattgaaactctccg |
195 |
Q |
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| T |
42849834 |
tcaataatccatcaccatcagaatccaatgcctcaattgcaatttccacttctttcaattgaaactctccg |
42849904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 42846747 - 42846917
Alignment:
| Q |
25 |
ccacacccttcatcatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccattagcgctatcaaatcctccaaac |
124 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||| |
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| T |
42846747 |
ccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcctcctctccccctgattccattaacgtaatcaaatctcccaaac |
42846846 |
T |
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| Q |
125 |
tcaataacccatcaccatcagaatccaatgcctcaatagcaatctccacttctttcaattgaaactctccg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
42846847 |
tcaataacccatcaccatcagaatccaatgcctcaatagcaatttcaacttctttcaattgaaactctccg |
42846917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 33931535 - 33931679
Alignment:
| Q |
39 |
atcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccattagcgctatcaaatcctccaaactcaataacccatca |
138 |
Q |
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||||||||| ||||| ||||| |||||||||||||| |||| ||||||||| ||| |||||| | || || || |||||||||||||| | |||||| |
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| T |
33931535 |
atcatacatctcaaatgcttctctcaaatccttcaacttttgttcctctccaccttcttccatcaaagcaattaattcctccaaactcaaataaccatca |
33931634 |
T |
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| Q |
139 |
ccatcagaatccaatgcctcaatagcaatctccacttctttcaat |
183 |
Q |
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| T |
33931635 |
ccatctgaatccattgcttcaatagccatttcagcttctttcaat |
33931679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 33938340 - 33938484
Alignment:
| Q |
39 |
atcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccattagcgctatcaaatcctccaaactcaataacccatca |
138 |
Q |
| |
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||||||||| ||||| ||||| |||||||||||||| |||| ||||||||| ||| |||||| | || || || |||||||||||||| | |||||| |
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| T |
33938340 |
atcatacatctcaaatgcttctctcaaatccttcaacttttgttcctctccaccttcttccatcaaagcaattaattcctccaaactcaaataaccatca |
33938439 |
T |
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| Q |
139 |
ccatcagaatccaatgcctcaatagcaatctccacttctttcaat |
183 |
Q |
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||||| ||||||| ||| |||||||| || || ||||||||||| |
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| T |
33938440 |
ccatctgaatccattgcttcaatagccatttcagcttctttcaat |
33938484 |
T |
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