View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_high_5 (Length: 476)
Name: NF19893_high_5
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 53538372 - 53537928
Alignment:
| Q |
19 |
aactgcatattgaatgattaagaaatattaattttagttaactgttaaacactgaatcgcatatattggaaaactaacgtgctcactattggatgatttg |
118 |
Q |
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| T |
53538372 |
aactgcatattgaatgattaagaaatattaattttagttaactgttaaacactgaatcgcatatattggaaaactaacgtgctcactattggatgatttg |
53538273 |
T |
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| Q |
119 |
taaacataaaaagggaaataaattaagttataataagcaagcaaacttgttcgataggcagnnnnnnnnnnnnnnnnncataaaacagtcttgctgagac |
218 |
Q |
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| T |
53538272 |
taaacataaaaagggaaataaattaagttataataagcaagcaaacttgttcgataggcagaaaaagaaaaaaaaaa-cataaaacagtcttgctgagac |
53538174 |
T |
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| Q |
219 |
ttatacttaaaaaacaaactgatccagacaaaggacaaaagctggattcaatttaaactaaaaacatgatatttccctccattcattcgcatcaagcatc |
318 |
Q |
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| T |
53538173 |
ttatacttaaaaaacaaactgatccagacaaaggacaaaagctggattcaatttaaactaaaaacatgatatttccctccattcattcgcatcaagcatc |
53538074 |
T |
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| Q |
319 |
cttttcgatcttcacacatttcagcttcacaggtttgttaatagacatttcaccatcatctttgtagtcgacaatatcacaatcatccaaatcagcagac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53538073 |
cttttcgatcttcacacatttcagcttcacaggtttgttaatagacatttcaccatcatctttgtagtcgacaatatcacaatcatccaaatcagcagac |
53537974 |
T |
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| Q |
419 |
ctctttccagaccccttgctacatggtgtattctgctcttcatttt |
464 |
Q |
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| T |
53537973 |
ctctttccagaccccttgctacatggtgtattctgctcttcatttt |
53537928 |
T |
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