View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19893_high_7 (Length: 428)

Name: NF19893_high_7
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19893_high_7
NF19893_high_7
[»] chr7 (5 HSPs)
chr7 (72-141)||(8431501-8431570)
chr7 (18-74)||(8431392-8431448)
chr7 (204-283)||(8434908-8434986)
chr7 (218-287)||(8378248-8378317)
chr7 (301-349)||(8339289-8339337)
[»] scaffold0060 (2 HSPs)
scaffold0060 (204-283)||(75437-75515)
scaffold0060 (72-129)||(75920-75977)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 8431501 - 8431570
Alignment:
Q  72 aaatgacaaatcttaacactaattgaaattaggagtacaagaagttatagagagcaacagaatgcagatt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8431501 aaatgacaaatcttaacactaattgaaattaggagtacaagaagttatagagagcaacagaatgcagatt 8431570  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 8431392 - 8431448
Alignment:
Q  18 atttcaatgtacataatcatcgccaatgaaacccttcatgtgtgtgagaagaagaaa 74  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8431392 atttcaatgtacataatcatcgccaatgaaacctttcatgtgtgtgagaagaagaaa 8431448  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 8434908 - 8434986
Alignment:
Q  204 tgttccttaatactagtcaacatccacatttgagtagagcaaaacaaagttcttcccaccaaagtccatatatgaaagcc 283  Q
    |||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  8434908 tgttccctaata-tagtcaacatctacatttgagtagaacaaaacaaagttcttcccaccaaagtccttatattaaagcc 8434986  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 8378248 - 8378317
Alignment:
Q  218 agtcaacatccacatttgagtagagcaaaacaaagttcttcccaccaaagtccatatatgaaagcctcta 287  Q
    |||||||||||||||||||||| | |||||| |||||||||||||||| ||||||||||  |||||||||    
T  8378248 agtcaacatccacatttgagtaaaacaaaaccaagttcttcccaccaatgtccatatattgaagcctcta 8378317  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 8339289 - 8339337
Alignment:
Q  301 aaaggccaaatgatgatgacaaaaaggaatgaaagaatatgatatgaat 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8339289 aaaggccaaatgatgatgacaaaaaggaatgaaagaatatgatttgaat 8339337  T

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Target: scaffold0060 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 75515 - 75437
Alignment:
Q  204 tgttccttaatactagtcaacatccacatttgagtagagcaaaacaaagttcttcccaccaaagtccatatatgaaagcc 283  Q
    |||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  75515 tgttccctaata-tagtcaacatctacatttgagtagaacaaaacaaagttcttcccaccaaagtccttatattaaagcc 75437  T

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Target: scaffold0060; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 75977 - 75920
Alignment:
Q  72 aaatgacaaatcttaacactaattgaaattaggagtacaagaagttatagagagcaac 129  Q
    |||||| |||||||| || |||||||||||| ||||||||||||||||| ||| ||||    
T  75977 aaatgataaatcttatcattaattgaaattaagagtacaagaagttataaagaacaac 75920  T

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