View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_high_9 (Length: 415)
Name: NF19893_high_9
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 197 - 404
Target Start/End: Original strand, 695411 - 695615
Alignment:
| Q |
197 |
ttaactagtattcaggggaattccttggcattttccatggagnnnnnnnnnncttaaaaacattatcctacttttgtaaagtctaactcatggctcaagt |
296 |
Q |
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| T |
695411 |
ttaattagtattcaggggaattgcttagcattttccatggagttttttt---cttaaaaacattatcctacttttgtaaagtctaactcatggctcaaat |
695507 |
T |
|
| Q |
297 |
ttgagagattcataatcctaaatacctcacacctttgacgctaattttatcgtcggagtgtttacatgtacactacatttcgctgtggaattgtcagcct |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
695508 |
ttgagagattcataatcctaaatacctcacacctttgacgctaattttatcgtcggagtgtttacatgtacactacatttcgttgtggaagtgtcagcct |
695607 |
T |
|
| Q |
397 |
gtcgcctt |
404 |
Q |
| |
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| |||||| |
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| T |
695608 |
gccgcctt |
695615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 695230 - 695344
Alignment:
| Q |
16 |
ctttattccaccaaacccggactgttcaccaatacatgctatactaacacatatgcattcttgaattttcacgacatattcattcgggttctttagcatt |
115 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
695230 |
ctttattccaccaaatccggactgttcaccaatacatgctatactaacacataggcattcttgaattttcacgacatattcattcgggttctttagcatt |
695329 |
T |
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| Q |
116 |
gctcttaaaataaac |
130 |
Q |
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||| ||||||||||| |
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| T |
695330 |
gcttttaaaataaac |
695344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 2478026 - 2477926
Alignment:
| Q |
16 |
ctttattccaccaaacccggactgttcaccaatacatgctatactaacacatatgcattcttgaattttcac-gacatattcattcgggttctttagcat |
114 |
Q |
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||||||||||| ||| | | ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
2478026 |
ctttattccactaaatcagtcctgttcaccaatacatgctatac----acatatgcattcttgaattttcactgacatattcattcgcgttctttagcac |
2477931 |
T |
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| Q |
115 |
tgctc |
119 |
Q |
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||||| |
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| T |
2477930 |
tgctc |
2477926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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