View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_low_1 (Length: 846)
Name: NF19893_low_1
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 128 - 831
Target Start/End: Complemental strand, 29656410 - 29655702
Alignment:
| Q |
128 |
gttctctttgtgccaattttaatggatggtttgacttctttgtccgaaatgtgggtcacaagttacatttaaacnnnnnnnnattataaaagttacgtta |
227 |
Q |
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| T |
29656410 |
gttctctttgtgccaattataatggatagtttgacttctttatccgaaacgtgggtcacaagttacatttaacttttttttttttacaaaagttacgtta |
29656311 |
T |
|
| Q |
228 |
aacctattaaacaaattatagtacgcatagaataaaatgtgtttatgttgatcatacatattagactcatcttttttgcaaccgcatgtatatattagac |
327 |
Q |
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| T |
29656310 |
aacctattaaacaaattatagtacgcatagaataaaatgtgtttatgttgatcatacatattagactcttcttttttgcaaccgcatgtatatattagac |
29656211 |
T |
|
| Q |
328 |
tttttgatgcaagcaatagataggaaattagcaaatgtttcaaattaaccctgcaggaggtggatataatatgatgtcagaatataattaaatgaaagat |
427 |
Q |
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| T |
29656210 |
tttttgatgcaagcaatagataggaaattagcaaatgtttcaaattaacc-tgcaggaggtggatata---tgatgtcagaatataattaaatgaaagat |
29656115 |
T |
|
| Q |
428 |
caactatcagagatttt----------aggaccactacatatttaaacatcaaaatctctttggtccaattaatgtattggcatattgttcaacaacata |
517 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29656114 |
caactatcagagatttttttacaaaagaggaccactacatatttaaacatcaaaatctctt-ggtccaattaatgtattggcatattgttcaacaacata |
29656016 |
T |
|
| Q |
518 |
ctgtagctcttaaattcgaataaatttcaatttttcatatcctagctaacnnnnnnngtctnnnnnnnctaacttttttgtcattaaactactcttatat |
617 |
Q |
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| T |
29656015 |
ctgtagctcttaaattcgaataaatttcaatttttcatatcctagctaactttttttgtctaaaaaaactaacttttttgtcattaaactactcctatat |
29655916 |
T |
|
| Q |
618 |
tcgtgctaattctaccaaaaataaataaatctatagtagtactagtattggagtaatcctaactatagctgttcttttcacaaacctttgtaacatgatt |
717 |
Q |
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| T |
29655915 |
tagtgctaattctaccaaaaataaataaatctattgtagtactagtattggagtaatcctaactatagctgttcttttcacaaacctttgtaacatgatt |
29655816 |
T |
|
| Q |
718 |
ttagtataacaaagcactggttttgtcattatcacttatataaactttatttaattgactaagtcctagtaccagtattgaagatgatattgctcctaag |
817 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29655815 |
ttagcataacaaagcactggttttgtcattatcacttatataaactttatttaattgtctaagtcctagtactagtattgaagatgatattgctcctaag |
29655716 |
T |
|
| Q |
818 |
tcctaagttagtat |
831 |
Q |
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| T |
29655715 |
tcctaagttagtat |
29655702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 29656496 - 29656408
Alignment:
| Q |
18 |
atatagccaatgaaaataacccattaatgaagatggtgtatccatttaggttgatctgatgatgttagtttgagactgtaaaatgtgtt |
106 |
Q |
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| T |
29656496 |
atatagccaatgaaaataaccgattaacgaagatggtgtatccatttaggttgatctggtggtgttagtttgagaccgtaaaatgtgtt |
29656408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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