View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_low_11 (Length: 360)
Name: NF19893_low_11
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 54904991 - 54904648
Alignment:
| Q |
1 |
ttgacagtgagtttatgtgacaatgatatannnnnnnnnactttgctaatttgatgaatgattgttaaatatggatattattgttcctaatatgtagttt |
100 |
Q |
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| T |
54904991 |
ttgacagtgagtttatgtgacaatgatatttttttttttactttgctaatttgatgaatgattgttaaatatggatattattgttcctaatatgtagttt |
54904892 |
T |
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| Q |
101 |
cttcatctgttattgcagaggcttcgcctaagaaaatacttgacttgatgaatgttgaaggacttacaagggaaaatgtatccagccatttgcaggtaca |
200 |
Q |
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| T |
54904891 |
cttcaactgttattgcagaggcttcgcctaagaaaatacttgacttgatgaatgttgaaggacttacaagggaaaatgtatccagccatttgcaggtaca |
54904792 |
T |
|
| Q |
201 |
aattatatataactttccctttagtaaagaaatctcagactagtttatcatgaaaatatttgatcgcctccattttgcaaatacggtcgaagttaaaggg |
300 |
Q |
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| T |
54904791 |
aattatatataactttcccttttgtaaagaaatctcagactagtttatcatgaaaatatttgatcgcctccattttgcaaatactgtcgaagttaaaggg |
54904692 |
T |
|
| Q |
301 |
gataatttactttttaacttgttcttgtagataaataatgatcc |
344 |
Q |
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| T |
54904691 |
gataatttactttttaacttgttcttgtagataaataatgatcc |
54904648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 51 - 314
Target Start/End: Complemental strand, 54894455 - 54894197
Alignment:
| Q |
51 |
ttgatgaatgattgttaaatatggatattattgttcctaatatgtagtttcttcatctgttattgcagaggcttcgcctaagaaaatacttgacttgatg |
150 |
Q |
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| T |
54894455 |
ttgatgattgatacttaaatatggatattattgttcctaatatgtagtttcttcatctattattgcagaggcttatcctaaaaaaatacgtgacttgatg |
54894356 |
T |
|
| Q |
151 |
aatgttgaaggacttacaagggaaaatgtatccagccatttgcaggtacaaattatatataactttccctttagtaaagaaatctcagactagtttatca |
250 |
Q |
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| T |
54894355 |
aatgttgaagggcttacaagggaaaatgtagctagccatttgcaggtacaaat----tataacttaccctttagtaaaaaaaaatcagactactttatta |
54894260 |
T |
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| Q |
251 |
tgaaaatatttgatcgcctccattttgcaaatacggtcgaagttaaaggggataatttactttt |
314 |
Q |
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| T |
54894259 |
ttaaaatatttgatcatcgcctttttgcaaatacggttg-atttgaaggggataatttactttt |
54894197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 69 - 314
Target Start/End: Complemental strand, 54888814 - 54888573
Alignment:
| Q |
69 |
atatggatattattgttcctaatatgtagtttcttcatctgttattgcagaggcttcgcctaagaaaatacttgacttgatgaatgttgaaggacttaca |
168 |
Q |
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|||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||| |
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| T |
54888814 |
atatggatattattgttcctaacatgtactttcttcaactgttattgcagaggcttatcctaagaagatatgtgacttgatgaatgttgaagggcttaca |
54888715 |
T |
|
| Q |
169 |
agggaaaatgtatccagccatttgcaggtacaaattatatataactttccctttagtaaagaaatctcagactagtttatcatgaaaatatttgatcgcc |
268 |
Q |
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| T |
54888714 |
agggaaaatgtagctagccatttgcaggtacaaactata-atttctt---cttttgtcaaaaaaattcatactagtttatcattaaaatattttatcacc |
54888619 |
T |
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| Q |
269 |
tccattttgcaaatacggtcgaagttaaaggggataatttactttt |
314 |
Q |
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|| |||||||||||| |||||||||||| |||||| ||||||||| |
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| T |
54888618 |
acctttttgcaaataccgtcgaagttaaaagggatactttactttt |
54888573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 22085982 - 22086071
Alignment:
| Q |
108 |
tgttattgcagaggcttcgcctaagaaaatacttgacttgatgaatgttgaaggacttacaagggaaaatgtatccagccatttgcaggt |
197 |
Q |
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||||||||||| |||| || |||||||||||||| |||||||| ||||||| |||| || |||||||| | |||||||||||||| |
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| T |
22085982 |
tgttattgcaggggctgttccgaagaaaatacttgagctgatgaatattgaagggattaccagagaaaatgtggcaagccatttgcaggt |
22086071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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