View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_low_12 (Length: 353)
Name: NF19893_low_12
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_low_12 |
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| [»] scaffold0026 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 25802533 - 25802859
Alignment:
| Q |
17 |
acaacttatatatgggacatggtaaaggaagtagcaggaaacttgacgccactattcctagtttacagaatacattgtacgctgcacataattgcagagg |
116 |
Q |
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| T |
25802533 |
acaacttatatatgggacatggtaaaggaagtagcaggaaacttgaggccactattcctagtttacagaatacattgtacgctgcacataattgcagagg |
25802632 |
T |
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| Q |
117 |
aagtagaggaagtaaaggaaagaaggtgaaaaagtgttgtgagattgctggatttgcggtgcagattgtgatttcagctgttttgggtgatcctacgact |
216 |
Q |
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| T |
25802633 |
aagtagaggaagtaaaggaaagaaggtgaaaaagtgttgtgagattgctggatttgcggtgcagattgtgatttcagcggttttgggtgatcctacgact |
25802732 |
T |
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| Q |
217 |
ctcattgctggtgttgttggggcactcatgtctagggcttgaatatcatggaacataacagaatctatcttttgtcttttgttgtgacgtgtatgttagt |
316 |
Q |
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| T |
25802733 |
ctcattgctggtgttgttggggcactcatgtctagggcttgaatatcatggaatataacagaatctatcttttgtcttttgttgtgacgtgtatgttagt |
25802832 |
T |
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| Q |
317 |
tttgtttagtaccacatgatgatgatg |
343 |
Q |
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| T |
25802833 |
tttgtttagtaccacatgatgatgatg |
25802859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 95 - 343
Target Start/End: Complemental strand, 105845 - 105595
Alignment:
| Q |
95 |
acgctgcacataattgcagaggaagtagaggaagtaaaggaaagaaggtgaaaaa--gtgttgtgagattgctggatttgcggtgcagattgtgatttca |
192 |
Q |
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| T |
105845 |
acgctgcacataattgcagaggaagtagaggaagtaaaggaaagaaggtgaaaaaaagtgttgtgagattgctggatttgcggtgcagattgtgatttca |
105746 |
T |
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| Q |
193 |
gctgttttgggtgatcctacgactctcattgctggtgttgttggggcactcatgtctagggcttgaatatcatggaacataacagaatctatcttttgtc |
292 |
Q |
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| T |
105745 |
gcggttttgggtgatcctacgactctcattgctggtgttgttggggcgctcatgtctagggcttgaatatcatggaacataacagaatctatcttttgtc |
105646 |
T |
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| Q |
293 |
ttttgttgtgacgtgtatgttagttttgtttagtaccacatgatgatgatg |
343 |
Q |
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| T |
105645 |
ttttgttgtgacgtgtatgttagttttgtttagtaccacatgatgatgatg |
105595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 108703 - 108620
Alignment:
| Q |
17 |
acaacttatatatgggacatggtaaaggaagtagcaggaaacttgacgccactattcctagtttacagaatacattgtacgctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
108703 |
acaacttatatatgggacatggtaaaggaagtagcaggaaacttgaggccattattcctagtttacagaatacattgtacgctg |
108620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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