View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_low_13 (Length: 348)
Name: NF19893_low_13
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 179 - 330
Target Start/End: Complemental strand, 55181130 - 55180977
Alignment:
| Q |
179 |
taacttggattaatctattgttggtcaattgcttatccaattcaacttaaacaatataatctttaattccactttattttatt--nnnnnnnnngatgaa |
276 |
Q |
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| T |
55181130 |
taacttggattaatctattgttggtcaattgcttatcaaattcaacttaaacaatataatctttaattccactttattttattaaaaaaaaaaagatgaa |
55181031 |
T |
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| Q |
277 |
atggtttttgactcaaaattcattgtaggaaaggtgttaaataaaattggagga |
330 |
Q |
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| T |
55181030 |
atggtttttgactcaaaattcattgttggaaaggtgttaaataaaattggagga |
55180977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 55181339 - 55181210
Alignment:
| Q |
34 |
ttcaattgtttgaattattttacaataaaataaaatagaggaaaagacttggtctttctcattctcatgatatacaaaatgaaaagaagnnnnnnngttt |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
55181339 |
ttcaattgtttgaattattttacaataaaataaaatagaggaaaagacttggtctttctcattctcatgatatacaaaatgaaaggaagaaaaaaagttt |
55181240 |
T |
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| Q |
134 |
agtattagacggaatgaaatgcaattcctt |
163 |
Q |
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| T |
55181239 |
agtattagacggaatcaaatgcaattcctt |
55181210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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