View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_low_14 (Length: 336)
Name: NF19893_low_14
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 3 - 320
Target Start/End: Complemental strand, 41831818 - 41831496
Alignment:
| Q |
3 |
cataggctaggacaacagtggactctatatagtcccttgcttgtaataaagacaacagaagaaaattaataaaat-tatccttttctctcttattttctg |
101 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
41831818 |
cataggctaggacaacagtggactcgatatagtcccttgcttgtaataacgacaacagaagaaaattaataaaatctatccttt-ctctcttattttctg |
41831720 |
T |
|
| Q |
102 |
gagttgatactgctcgaaagtatcaattctctctaccctaacctatcatacattgtacaatattttagaaccattatattgtggagagaatacacgaact |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41831719 |
gagttgatactgctcgaaagtatcaattctctctaccctaacctatcatacattgtacaatattttagaaccattatattgtggagagaatacacgaact |
41831620 |
T |
|
| Q |
202 |
tagctgaacctaagagttatcatacatggtcc-----aaagtggaccaaatgtgaaaagttccatatacaccatagttataggggtcaactatttcatcc |
296 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41831619 |
tagctgaacctaagagttatcatacatggtccaaattaaagtggaccaaatgtgaaaagttccatatacaccatagtgataggggtcaactatttcatcc |
41831520 |
T |
|
| Q |
297 |
tagtattgaatgtggatggaattt |
320 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
41831519 |
tagtattgaatgtggatggaattt |
41831496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 3 - 320
Target Start/End: Complemental strand, 41837609 - 41837310
Alignment:
| Q |
3 |
cataggctaggacaacagtggactctatatagtcccttgcttgtaataaagacaacagaagaaaattaataaaattatccttttctctcttattttctgg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41837609 |
cataggctaggacaacagtggactctatatagtcccttgcttgtaataatgacaacagaagaaaattaataaaattatccttt-ctctcttattttctgg |
41837511 |
T |
|
| Q |
103 |
agttgatactgctcgaaagtatcaattctctctaccctaacctatcatacattgtacaatattttagaaccattatattgtggagagaatacacgaactt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41837510 |
agttgatactgctcgaaagtatcaattctctctaccctaacctatcatacattgtacaatattttagaaccattatattgtggagagaatacacgaactt |
41837411 |
T |
|
| Q |
203 |
agctgaacctaagagttatcatacatggtccaaagtggaccaaatgtgaaaagttccatatacaccatagttataggggtcaactatttcatcctagtat |
302 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
41837410 |
agctgaacctaagagtt-----------------gtggaccaaatgtgaaaagttccatatacaccaaagtgataggggtcaactatttcatcctagtat |
41837328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 3 - 320
Target Start/End: Complemental strand, 11650620 - 11650321
Alignment:
| Q |
3 |
cataggctaggacaacagtggactctatatagtcccttgcttgtaataaagacaacagaagaaaattaataaaattatccttttctctcttattttctgg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11650620 |
cataggctaggacaacagtggactctatatagtcccttgcttgtaataatgacaacagaagaaaattaataaaattatccttt-ctctcttattttctgg |
11650522 |
T |
|
| Q |
103 |
agttgatactgctcgaaagtatcaattctctctaccctaacctatcatacattgtacaatattttagaaccattatattgtggagagaatacacgaactt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11650521 |
agttgatactgctcgaaagtatcaattctctctaccctaacctatcatacattgtacaatattttagaaccattatattgtggagagaatacacgaactt |
11650422 |
T |
|
| Q |
203 |
agctgaacctaagagttatcatacatggtccaaagtggaccaaatgtgaaaagttccatatacaccatagttataggggtcaactatttcatcctagtat |
302 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
11650421 |
agctgaacctaagagtt-----------------gtggaccaaatgtgaaaagttccatatacaccaaagtgataggggtcaactatttcatcctagtat |
11650339 |
T |
|
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