View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_low_17 (Length: 322)
Name: NF19893_low_17
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 7779048 - 7778730
Alignment:
| Q |
1 |
tcgcggccctttccatttctctgtttcaaaccaggnnnnnnnnctaatttaacattggaggagattatttgagaaagttgggaggnnnnnnnnnctaatt |
100 |
Q |
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| T |
7779048 |
tcgcggccctttccatttctctgtttcaaaccaggaaaaaaaactaatttaacattggaggagattatttgagaaagttgggaggaaaaaaaaactaatt |
7778949 |
T |
|
| Q |
101 |
taaaattaaaacagattaattttcattccagctatgtttaggcatacactctctttggtctccatgtataagtcaagcttgaaggcttttcgaataagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
7778948 |
taaaattaaaacagattaattttcattccagctatgtttaggcatacactctctttggtctccatgtataagtcaagcttgaagtcttttcgaagaagag |
7778849 |
T |
|
| Q |
201 |
aactgtaaattaccaaaggttttactaactcccatagatggacctaatgtttgcttcacagttctacctcaattagcatttaagtttctagcagacttcg |
300 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| || |||| ||||||| ||||||||||||||| |
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| T |
7778848 |
aactttaaattaccaaaggttttactaacttccatagatggatctaatgtttgcatcacagttctatctaaattgacatttaattttctagcagacttca |
7778749 |
T |
|
| Q |
301 |
agttatctgctatttttga |
319 |
Q |
| |
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| || |||||||||||||| |
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| T |
7778748 |
atttttctgctatttttga |
7778730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 44 - 319
Target Start/End: Complemental strand, 7816768 - 7816490
Alignment:
| Q |
44 |
ctaatttaacattggaggagattatttgagaaagttgggaggnnnnnnnnn-ctaatttaaaattaaaacagattaattttcattccagctatgtttagg |
142 |
Q |
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| T |
7816768 |
ctaatttaaaattggaggagattatttgagaaagtttggaggaaaaaaaaaactaatttaaaattaaaacagattaattttcattccagctatgtttagg |
7816669 |
T |
|
| Q |
143 |
catacactctctttggtctcca--tgtataagtcaagcttgaaggcttttcgaataagagaactgtaaattaccaaaggttttactaactcccatagatg |
240 |
Q |
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| T |
7816668 |
catacactctctttggtctccatgtgtataagtcaagcttgaagtcgttttggagaagggaactttaaattgccaaaggttttactaacttccataaatg |
7816569 |
T |
|
| Q |
241 |
gacctaatgtttgcttcacagttctacctcaattagcatttaagtttctagcagacttcgagttatctgctatttttga |
319 |
Q |
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|| ||||||||||| ||||||||||| | |||| ||||||| |||||||||||||| | || |||||||||||||| |
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| T |
7816568 |
gatctaatgtttgcatcacagttctagcaaaattgacatttaattttctagcagactttaatttttctgctatttttga |
7816490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 7793607 - 7793555
Alignment:
| Q |
95 |
ctaatttaaaattaaaacagattaattttcattccagctatgtttaggcatac |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7793607 |
ctaatttaaaattaaaacagattaattttcattccagctatgtttaggcatac |
7793555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 7905628 - 7905688
Alignment:
| Q |
206 |
taaattaccaaaggttttactaactcccatagatggacctaatgtttgcttcacagttcta |
266 |
Q |
| |
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|||||| |||||| ||| ||||||| ||||||||||| ||||||||||| ||| ||||||| |
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| T |
7905628 |
taaattgccaaagatttcactaacttccatagatggatctaatgtttgcatcaaagttcta |
7905688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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