View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_low_18 (Length: 311)
Name: NF19893_low_18
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 263
Target Start/End: Original strand, 12246957 - 12247218
Alignment:
| Q |
4 |
cttatctaaattgaagcccataacagaagtattaaatgatgaagaaattgtagaatggaagaaaattatggagggatgcaggaaaaagaa-ctattgaga |
102 |
Q |
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| T |
12246957 |
cttatctaaattgaaggccataacagaagtactaaatgatgaagaaattgtagaatggaagaaaattatggagggatgcaggaaaaagaaactattgaga |
12247056 |
T |
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| Q |
103 |
gataaagggtgagaaccatt-tagcagttgtggaaaaacggaagaaatacacagtagagggtacaaatcatgataaattatttttgagttaattgggttg |
201 |
Q |
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| T |
12247057 |
gataaagggtgtgaaccattgtagaagttgtggaaaaacggaagagatacacagtagagggtataaatcatgataaattatttttgagttaattgggttg |
12247156 |
T |
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| Q |
202 |
cagttatttctttctgtttcttttttattgggttgggtcatagttaagtttcttttgttgtt |
263 |
Q |
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| T |
12247157 |
cagttatttctttctgtttcttttttattgggttgggtcatagttaagtttcttttgttgtt |
12247218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 24899350 - 24899145
Alignment:
| Q |
6 |
tatctaaattgaagcccataacagaagtattaaatgatgaagaaattgtagaatggaagaaaattatggagggatgcaggaaaaaga---actattgaga |
102 |
Q |
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| T |
24899350 |
tatctaaattgaaggccataacataagtactaaatgatgaagaaattgtagaatggaaggaaattatggagggatgcaggaaaaagaaacaatattgaga |
24899251 |
T |
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| Q |
103 |
gataaagggtgagaaccatt-tagcagttgtggaaaaacggaagaaatacacagtagagggtacaaatcatgataaattatttttgagttaattgggttg |
201 |
Q |
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| T |
24899250 |
gataaagggtgtgaaccattgtaccagttgtggaaaaacggaagagatacacagtagagggtacaaatcaagataaattattttttagttaattgggttg |
24899151 |
T |
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| Q |
202 |
cagtta |
207 |
Q |
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| T |
24899150 |
cagtta |
24899145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 25401250 - 25401313
Alignment:
| Q |
199 |
ttgcagttatttctttctgtttcttttttattgggttgggtcatagttaagtttcttttgttgt |
262 |
Q |
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| T |
25401250 |
ttgcatttatttctttccgtttcttttttattgggttgggtcatagttaagtttcttttgttgt |
25401313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 25497430 - 25497493
Alignment:
| Q |
199 |
ttgcagttatttctttctgtttcttttttattgggttgggtcatagttaagtttcttttgttgt |
262 |
Q |
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| T |
25497430 |
ttgcatttatttctttccgtttcttttttattgggttgggtcatagttaagtttcttttgttgt |
25497493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 24897976 - 24897913
Alignment:
| Q |
199 |
ttgcagttatttctttctgtttcttttttattgggttgggtcatagttaagtttcttttgttgt |
262 |
Q |
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| T |
24897976 |
ttgcatttatttctttccgtttcttttttattgggttgggtcataattaagtttcttttgttgt |
24897913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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