View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_low_2 (Length: 572)
Name: NF19893_low_2
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 248 - 552
Target Start/End: Complemental strand, 50388544 - 50388242
Alignment:
| Q |
248 |
gaccttattgggtccatcgcatgacagattacacctcccactcatagaaggagcaaaagctagcatgatactttgcaaagaatcactttcaggctgataa |
347 |
Q |
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| T |
50388544 |
gaccttattgggtccatcgcatgacagattacacctctcactcatagaaggagcaaaagctagcatgatactttgcaaagaatcactttcaggctgataa |
50388445 |
T |
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| Q |
348 |
attcaccatgtctaccaagcgctcagccgaaatcgagcccccaacaaagatatgatcattacgtgagatctagatgtaccatatgtcatatagagacttg |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50388444 |
attcaccatgtctaccaagcgctcagccgaaatcgagcccacaacaaagatatgatcattacgtgagatctagatgtaccatatgtcatatagagacttg |
50388345 |
T |
|
| Q |
448 |
caagtcttaacctcactctctttccagcccccaaacccaaaaaatactcaaaatgcccaaccagaccacgaggagacaccaacactctcaccccattatc |
547 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50388344 |
caagtcttaacctcactctcttttcggcccccaaacccaaaaaatactcaaaatgcccaaccagaccacgaggagacacca--actctcaccccattatc |
50388247 |
T |
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| Q |
548 |
atata |
552 |
Q |
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||||| |
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| T |
50388246 |
atata |
50388242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 50388695 - 50388608
Alignment:
| Q |
97 |
cacccgagggaagagaaactccagagaaaagttggaactccaccctccaagaaagagagacaagaaatacccacaagatgggatagtt |
184 |
Q |
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| T |
50388695 |
cacccgagggaagagaaactcctaagaaaagttggaactccaccctccaagaaagagagacaagaaatacccacaagatgggatagtt |
50388608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 415
Target Start/End: Complemental strand, 27295686 - 27295591
Alignment:
| Q |
319 |
tttgcaaagaatcactttcaggctgataaattcaccatgtctaccaagcgctcagccgaaatcgagcccccaacaaagatatgatcattacgtgaga |
415 |
Q |
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||||||| ||| |||||||||||| | |||||||||||||| ||||| ||| ||||||| ||||| | |||| ||||||| | |||||||| |||| |
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| T |
27295686 |
tttgcaaggaaccactttcaggctaa-aaattcaccatgtccaccaaatgcttagccgaagtcgagtctccaaaaaagataaggtcattacgagaga |
27295591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 8172231 - 8172293
Alignment:
| Q |
258 |
ggtccatcgcatgacagattacacctcccactcatagaaggagcaaaagctagcatgatactt |
320 |
Q |
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|||||| | |||||||| | ||| ||||||||||||||||||||| ||||||||||| |||| |
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| T |
8172231 |
ggtccagcacatgacaggctgcacttcccactcatagaaggagcaagagctagcatgacactt |
8172293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 14354033 - 14354095
Alignment:
| Q |
258 |
ggtccatcgcatgacagattacacctcccactcatagaaggagcaaaagctagcatgatactt |
320 |
Q |
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|||||| | |||||||| || ||| |||||| |||||||||||||| ||||||||||| |||| |
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| T |
14354033 |
ggtccagcacatgacaggttgcacttcccacgcatagaaggagcaagagctagcatgacactt |
14354095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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