View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_low_30 (Length: 244)
Name: NF19893_low_30
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 41556688 - 41556906
Alignment:
| Q |
18 |
atccaatccaaccctttttccttctttcaacaatgctctttctcatgaggtatttaagacagaaaactttgaagaagagcattttcttaatgtgtcagaa |
117 |
Q |
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| T |
41556688 |
atccaatccaaccctttttccttctttcaacaatgctctttctcatgaggtatttaagacagaaaactttgaagaagagcattttcttaatgtgtcagaa |
41556787 |
T |
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| Q |
118 |
caaatgaaagtagatgataacagcgagttatcagaattatttgataaattacttcttggtactaaagtcacaaaagggccgcatcaaaacacaagctttc |
217 |
Q |
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| T |
41556788 |
caagtgaaagtagatgataacagcgagttatcagaattatttgataaattacttcttggtactaaagtcacaaaagggccgcatcaaaacacaagcttcc |
41556887 |
T |
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| Q |
218 |
agcagaatgaagaattatc |
236 |
Q |
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| T |
41556888 |
agcagaatgaagaattatc |
41556906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 41589341 - 41589566
Alignment:
| Q |
26 |
caaccctttttccttctttcaacaatgctctttctcatgaggtatttaagacagaaaactttgaagaagagcattttcttaatgtgtca----------- |
114 |
Q |
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| T |
41589341 |
caaccattttcccttctttcaataatgctctttctcatgaggtacttcagacagaaaactttgaagaagagcattttctcaatgtgtcacaaaatggatc |
41589440 |
T |
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| Q |
115 |
-gaacaaatgaaagtagatgataacagcgagttatcagaattatttgataaattact---tcttggtactaaagtcacaaaagggccgcatcaaaacaca |
210 |
Q |
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| T |
41589441 |
agaacaagtgtatgtagatgatagcggtgagttatcagaattatttgataaagtactagttcttggtactaaattcacaaaagggccacttcaaaacaca |
41589540 |
T |
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| Q |
211 |
agctttcagcagaatgaagaattatc |
236 |
Q |
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| T |
41589541 |
agcttccagcagaatgaagaattatc |
41589566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 41582812 - 41583037
Alignment:
| Q |
26 |
caaccctttttccttctttcaacaatgctctttctcatgaggtatttaagacagaaaactttgaagaagagcattttcttaatgtgtca----------- |
114 |
Q |
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| T |
41582812 |
caacccttttcccttccttcaataatgctctttctcatgacgcaattcagacagagaactttgaagaagagcattttctcaatgtgtcacaaaatggatc |
41582911 |
T |
|
| Q |
115 |
-gaacaaatgaaagtagatgataacagcgagttatcagaattatttgataaattact---tcttggtactaaagtcacaaaagggccgcatcaaaacaca |
210 |
Q |
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| T |
41582912 |
agaacaattgcatgtaggtgataccagtgagttatcagaattatttgataaagtactagttcttggtactaaattcacaaaagggctacttcgaaacaca |
41583011 |
T |
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| Q |
211 |
agctttcagcagaatgaagaattatc |
236 |
Q |
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| T |
41583012 |
agctttcagcagaatgaagaattatc |
41583037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 41570424 - 41570618
Alignment:
| Q |
57 |
ttctcatgaggtatttaagacagaaaactttgaagaagagcattttcttaatgtgtca------------gaacaaatgaaagtagatgataacagcgag |
144 |
Q |
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| T |
41570424 |
ttctcatgaggtgattaagacagaaaactttgaagaagagcattttctcaatgtgtcacaaaatgagtcagaacaagtatatgtagatgataacagcgag |
41570523 |
T |
|
| Q |
145 |
ttatcagaattatttgataaattac---ttcttggtactaaagtcacaaaagggccgcatcaaaacacaagctttcagcagaatgaagaattatc |
236 |
Q |
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| T |
41570524 |
ttaccagaattatttgataaattactagtccttggtactaaagtaaaaaaagggccacttcaaaacacaagctttcagcagaattatgaattatc |
41570618 |
T |
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