View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19893_low_31 (Length: 236)
Name: NF19893_low_31
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19893_low_31 |
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| [»] scaffold0471 (1 HSPs) |
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Alignment Details
Target: scaffold0471 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0471
Description:
Target: scaffold0471; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 11361 - 11283
Alignment:
| Q |
127 |
ctcaaacttaatacgagtgtgttgttgcttgtagtgttatcaaattcaaaactgaaactattatggagttgttgcttga |
205 |
Q |
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| T |
11361 |
ctcaaacttaatacgagtgtgttgttgcttgatgtgttatcaaattcaaaactgaaactattgtggggttcttgcttga |
11283 |
T |
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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 24126758 - 24126680
Alignment:
| Q |
127 |
ctcaaacttaatacgagtgtgttgttgcttgtagtgttatcaaattcaaaactgaaactattatggagttgttgcttga |
205 |
Q |
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| T |
24126758 |
ctcaaacttaatacgagtgtgttgttgcttgatgtgttatcaaattcaaaactgaaactattgtggggttcttgcttga |
24126680 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 24685578 - 24685508
Alignment:
| Q |
136 |
aatacgagtgtgttgttgcttg-tagtgttatcaaattcaaaactgaaactattatggagttgttgcttga |
205 |
Q |
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| T |
24685578 |
aatacgagtgtgttgttgcttgattgagttatcaaatttaaaactgaaactattgtggggttgttgcttga |
24685508 |
T |
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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 25649492 - 25649570
Alignment:
| Q |
127 |
ctcaaacttaatacgagtgtgttgttgcttgtagtgttatcaaattcaaaactgaaactattatggagttgttgcttga |
205 |
Q |
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| T |
25649492 |
ctcaaacttaatacgagtgtgttgttgcttgatgtgttaccaaattcaaaactgaaactattgtggggttgttgcttga |
25649570 |
T |
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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 9306644 - 9306714
Alignment:
| Q |
136 |
aatacgagtgtgttgttgcttg-tagtgttatcaaattcaaaactgaaactattatggagttgttgcttga |
205 |
Q |
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| T |
9306644 |
aatacgagtgtgttgttgcttgattgtgttatcaaattcaaaactgaaactattgtggggttgttgcttga |
9306714 |
T |
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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 49383996 - 49384066
Alignment:
| Q |
136 |
aatacgagtgtgttgttgcttg-tagtgttatcaaattcaaaactgaaactattatggagttgttgcttga |
205 |
Q |
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| T |
49383996 |
aatacgagtgtgttgttgcttgattgtgttatcaaatttaaaactgaaactattgtggggttgttgcttga |
49384066 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 15814914 - 15814875
Alignment:
| Q |
166 |
tcaaattcaaaactgaaactattatggagttgttgcttga |
205 |
Q |
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| T |
15814914 |
tcaaattcaaaactgaaactattttggggttgttgcttga |
15814875 |
T |
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