View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19893_low_6 (Length: 471)

Name: NF19893_low_6
Description: NF19893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19893_low_6
NF19893_low_6
[»] chr4 (4 HSPs)
chr4 (17-244)||(9952539-9952768)
chr4 (263-323)||(9952653-9952713)
chr4 (387-433)||(8824594-8824640)
chr4 (348-415)||(24166498-24166562)
[»] chr1 (4 HSPs)
chr1 (387-465)||(40226278-40226356)
chr1 (389-461)||(18649390-18649462)
chr1 (387-431)||(34719804-34719848)
chr1 (401-461)||(10336514-10336574)
[»] scaffold0024 (1 HSPs)
scaffold0024 (387-450)||(149396-149459)
[»] chr8 (1 HSPs)
chr8 (387-450)||(33401834-33401897)
[»] chr2 (3 HSPs)
chr2 (388-431)||(31088361-31088404)
chr2 (389-447)||(34346324-34346382)
chr2 (387-460)||(28616414-28616487)
[»] chr5 (6 HSPs)
chr5 (387-460)||(23247386-23247459)
chr5 (387-460)||(41800976-41801049)
chr5 (348-414)||(8513564-8513627)
chr5 (387-431)||(35006770-35006814)
chr5 (387-451)||(35638068-35638132)
chr5 (348-450)||(42086336-42086435)
[»] chr3 (2 HSPs)
chr3 (387-460)||(928598-928671)
chr3 (387-431)||(50405639-50405683)
[»] scaffold0045 (1 HSPs)
scaffold0045 (346-378)||(58030-58062)
[»] chr7 (2 HSPs)
chr7 (387-415)||(21190815-21190843)
chr7 (387-459)||(44961673-44961745)
[»] chr6 (2 HSPs)
chr6 (388-460)||(9366459-9366531)
chr6 (349-415)||(11142650-11142713)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 7e-81; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 9952539 - 9952768
Alignment:
Q  17 catattactcatgatacaaaatctcgtgattgatatgattaatttcttttcgtatttatttttacaataaaagtatttgtaataaatagaattcctcaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9952539 catattactcatgatacaaaatctcgtgattgatatgattcatttcttttcgtatttatttttacaataaaagtatttgtaataaatagaattcctcaaa 9952638  T
Q  117 caataa-nnnnnnngtctcataaagagaaaagcctagtaaagaatttataaggcttgaaaaaagaaagaatctctaggcttttagtatttaattttgcaa 215  Q
    ||||||        |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| || |||||||||  | |||||||||||||    
T  9952639 caataattttttttgtcttataaagagaaaagcctagtaaagaatttgtaaggcttggaaaaagaaagaaactttaggcttttcatctttaattttgcaa 9952738  T
Q  216 taaaagtatctgtaat-aatagaattggtc 244  Q
    ||||||||| |||||| |||||||||||||    
T  9952739 taaaagtatttgtaataaatagaattggtc 9952768  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 9952653 - 9952713
Alignment:
Q  263 gtcttataaagagagaagcctcgaaaagaatttgtaagggtaagaaaaagaaagaagcttt 323  Q
    |||||||||||||| |||||| | ||||||||||||||| |  ||||||||||||| ||||    
T  9952653 gtcttataaagagaaaagcctagtaaagaatttgtaaggcttggaaaaagaaagaaacttt 9952713  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 8824640 - 8824594
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgtttt 433  Q
    ||||||||| |||||||||||||| ||||||| || |||||||||||    
T  8824640 actaatctgcctcgtgcgtagaggtatgcacactgatcaagcgtttt 8824594  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 24166562 - 24166498
Alignment:
Q  348 ctttcgcaccggcatccgatccaccaaagatggatgactactaatctgactcgtgcgtagaggcatgc 415  Q
    ||||||||||||  ||||||||| ||||| ||| ||||||   ||||| |||||||||||||||||||    
T  24166562 ctttcgcaccggtttccgatccatcaaaggtgggtgacta---atctggctcgtgcgtagaggcatgc 24166498  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 40226278 - 40226356
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatcgaatctgatattcttcga 465  Q
    |||||||||||| ||||||||||||||||| | ||  |||||||| |  || ||||||||||||| |||||||||||||    
T  40226278 actaatctgacttgtgcgtagaggcatgcatactgaccaagcgttgttacctctgataatcgaatatgatattcttcga 40226356  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 461
Target Start/End: Original strand, 18649390 - 18649462
Alignment:
Q  389 taatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatcgaatctgatattct 461  Q
    ||||||| ||||| ||||||||||||| || || ||||||||| | |||||||| ||||||| | ||||||||    
T  18649390 taatctggctcgtacgtagaggcatgcgcactggtcaagcgttgttccccctgaaaatcgaacccgatattct 18649462  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 34719848 - 34719804
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgtt 431  Q
    ||||||||||||||||||||||||||||| || || |||||||||    
T  34719848 actaatctgactcgtgcgtagaggcatgcgcactggtcaagcgtt 34719804  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 10336574 - 10336514
Alignment:
Q  401 tgcgtagaggcatgcacattgttcaagcgttttcccccctgataatcgaatctgatattct 461  Q
    ||||||||||||||| || || ||||||||| | |||||||| ||||||| | ||||||||    
T  10336574 tgcgtagaggcatgcgcactggtcaagcgttgttccccctgaaaatcgaacccgatattct 10336514  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 450
Target Start/End: Complemental strand, 149459 - 149396
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatcgaa 450  Q
    ||||||||  ||||| |||||||||||||||| || ||||||||| | |||||||| |||||||    
T  149459 actaatctacctcgtacgtagaggcatgcacactggtcaagcgttgttccccctgagaatcgaa 149396  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 450
Target Start/End: Original strand, 33401834 - 33401897
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatcgaa 450  Q
    ||||||| ||||| |||||||||||||||||| || ||||| ||| | |||||||| |||||||    
T  33401834 actaatccgactcatgcgtagaggcatgcacactggtcaagtgttgttccccctgaaaatcgaa 33401897  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 431
Target Start/End: Complemental strand, 31088404 - 31088361
Alignment:
Q  388 ctaatctgactcgtgcgtagaggcatgcacattgttcaagcgtt 431  Q
    |||||||||||| |||||||||||||||| | ||||||||||||    
T  31088404 ctaatctgactcatgcgtagaggcatgcatactgttcaagcgtt 31088361  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 34346324 - 34346382
Alignment:
Q  389 taatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatc 447  Q
    ||||||||||| |||||||||||||||||| ||  |||| ||| | |||||||||||||    
T  34346324 taatctgactcatgcgtagaggcatgcacactggccaagtgttgttccccctgataatc 34346382  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 460
Target Start/End: Original strand, 28616414 - 28616487
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatcgaatctgatattc 460  Q
    ||||||||| ||||||||||||||||||| || ||  |||| ||| | |||||||| ||||||| | |||||||    
T  28616414 actaatctggctcgtgcgtagaggcatgcgcactgcccaagtgttattccccctgaaaatcgaacccgatattc 28616487  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 460
Target Start/End: Original strand, 23247386 - 23247459
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatcgaatctgatattc 460  Q
    ||||||||| |||||||||||||||||||| | || ||||||||| | || ||||  ||||||| | |||||||    
T  23247386 actaatctggctcgtgcgtagaggcatgcatactgatcaagcgttgttcctcctgggaatcgaacccgatattc 23247459  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 460
Target Start/End: Complemental strand, 41801049 - 41800976
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatcgaatctgatattc 460  Q
    ||||||| | ||||||||||||| ||||| ||||| ||||||||| | |||| ||| ||||||| | |||||||    
T  41801049 actaatccggctcgtgcgtagagacatgcgcattggtcaagcgttgttccccttgagaatcgaacccgatattc 41800976  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 414
Target Start/End: Complemental strand, 8513627 - 8513564
Alignment:
Q  348 ctttcgcaccggcatccgatccaccaaagatggatgactactaatctgactcgtgcgtagaggcatg 414  Q
    ||||||||||||  ||||| ||||||||| |||| |||||   ||||| ||||||||||||||||||    
T  8513627 ctttcgcaccggtttccgacccaccaaaggtggacgacta---atctggctcgtgcgtagaggcatg 8513564  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 35006770 - 35006814
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgtt 431  Q
    ||||||||| |||||||||||||||||||||| ||  ||||||||    
T  35006770 actaatctggctcgtgcgtagaggcatgcacactgaccaagcgtt 35006814  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 451
Target Start/End: Original strand, 35638068 - 35638132
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatcgaat 451  Q
    |||||||||||||||||||||||| ||||||| ||  ||| |||| | || ||||| ||||||||    
T  35638068 actaatctgactcgtgcgtagaggtatgcacactgaccaaacgttgttcctcctgaaaatcgaat 35638132  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 450
Target Start/End: Complemental strand, 42086435 - 42086336
Alignment:
Q  348 ctttcgcaccggcatccgatccaccaaagatggatgactactaatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatc 447  Q
    ||||||||||||  ||||| ||||||||| |||| |||||   ||| | ||| ||||||||||||||| || || ||||||||| | |||||||  ||||    
T  42086435 ctttcgcaccggtttccgacccaccaaaggtggacgacta---atccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgggaatc 42086339  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 460
Target Start/End: Complemental strand, 928671 - 928598
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatcgaatctgatattc 460  Q
    ||||||| | ||||||||||| ||||||| || || ||||| ||| | |||||||| ||||||||||| |||||    
T  928671 actaatccggctcgtgcgtagcggcatgcgcactggtcaagtgttgttccccctgagaatcgaatctggtattc 928598  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 50405639 - 50405683
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgtt 431  Q
    ||||||| ||||||||||||||||||||| || || |||||||||    
T  50405639 actaatccgactcgtgcgtagaggcatgcgcactggtcaagcgtt 50405683  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 378
Target Start/End: Original strand, 58030 - 58062
Alignment:
Q  346 ttctttcgcaccggcatccgatccaccaaagat 378  Q
    |||||||||||||| ||||||||||||||||||    
T  58030 ttctttcgcaccggtatccgatccaccaaagat 58062  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 415
Target Start/End: Original strand, 21190815 - 21190843
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgc 415  Q
    |||||||||||||||||||||||||||||    
T  21190815 actaatctgactcgtgcgtagaggcatgc 21190843  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 459
Target Start/End: Original strand, 44961673 - 44961745
Alignment:
Q  387 actaatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatcgaatctgatatt 459  Q
    ||||||||||||||| ||||||| |||||  | || |||||| || |||||||| | ||| ||||||||||||    
T  44961673 actaatctgactcgtacgtagagacatgcgtactggtcaagcattgtcccccctaaaaattgaatctgatatt 44961745  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 9366459 - 9366531
Alignment:
Q  388 ctaatctgactcgtgcgtagaggcatgcacattgttcaagcgttttcccccctgataatcgaatctgatattc 460  Q
    |||||| | ||||||||||||||||||| || ||  |||||||| | |||||| | ||||||| |||||||||    
T  9366459 ctaatccggctcgtgcgtagaggcatgcgcactggccaagcgttattccccctaaaaatcgaacctgatattc 9366531  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 415
Target Start/End: Complemental strand, 11142713 - 11142650
Alignment:
Q  349 tttcgcaccggcatccgatccaccaaagatggatgactactaatctgactcgtgcgtagaggcatgc 415  Q
    |||||||||||  ||||| ||||||||| ||||   | ||||||||||||| |||||||||||||||    
T  11142713 tttcgcaccggtctccgacccaccaaagttgga---caactaatctgactcatgcgtagaggcatgc 11142650  T

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