View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19894_high_2 (Length: 303)

Name: NF19894_high_2
Description: NF19894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19894_high_2
NF19894_high_2
[»] chr4 (1 HSPs)
chr4 (1-297)||(54636577-54636873)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 54636577 - 54636873
Alignment:
Q  1 agatttgacaaacataccatatgctcgagttcaggacgattccattccagttaaaattcaataaatatcnnnnnnnacaagattttaataaaaccactgt 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  54636577 agatttgacaaacataccatatgctcgagttcaggacgagtccattccagttaaaattcaataaatatctttttttacaagattttaataaaaccactgt 54636676  T
Q  101 ttgtcaagttacttgttcctgtgagtgagatgcatctggaactgatctgaattgtgtaattatcatggaattccttgctactgtattgcagggagagtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54636677 ttgtcaagttacttgttcctgtgagtgagatgcatctggaactgatctgaattgtgtaattatcatggaattccttgctactgtattgcagggagagtgc 54636776  T
Q  201 gaactaattaaaattgatatcaattgccatattcaaggtgatgttgtgatcgagggtattaacttgaatgatgatatggagcatgaaatgatgatgt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54636777 gaactaattaaaattgatatcaattgccatattcaaggtgatgttgtgatcgagggtattaacttgaatgatgatatggagcatgaaatgatgatgt 54636873  T

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