View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19894_low_1 (Length: 439)
Name: NF19894_low_1
Description: NF19894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19894_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 403
Target Start/End: Original strand, 11548628 - 11549039
Alignment:
| Q |
6 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
11548628 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatc |
11548727 |
T |
|
| Q |
106 |
cttgattttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactgaataatgttaat |
205 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11548728 |
cttaattttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactgaataatgttaat |
11548827 |
T |
|
| Q |
206 |
taaggtgctatgttgtttggtattcat--------------gcatgtatgatcttagccagtcaatttctttgaagatgttaaatttggttccaaaattc |
291 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11548828 |
taaggtgctatgttgtttggtattcatatgcaactttcttaccatgtatgatcttagccagtcaatttctttgaagatgttaaatttggttccaaaattc |
11548927 |
T |
|
| Q |
292 |
ttccctttaccaatcttcagagactcaatttgtacttcttttcgtatatgcttcttgtttattttgagtattttcccagatgcattttgtctacatttat |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| | |
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| T |
11548928 |
ctccctttaccaatcttcagagactcaatttgtacttcttttcgtagatgcttcttgtttattttgagtattttcctagctgcattttgtctacatttgt |
11549027 |
T |
|
| Q |
392 |
tttaatatcaga |
403 |
Q |
| |
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|||||||||||| |
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| T |
11549028 |
tttaatatcaga |
11549039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 6 - 349
Target Start/End: Complemental strand, 11444480 - 11444123
Alignment:
| Q |
6 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
11444480 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatc |
11444381 |
T |
|
| Q |
106 |
cttgattttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactgaataatgttaat |
205 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11444380 |
cttaattttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactgaataatgttaat |
11444281 |
T |
|
| Q |
206 |
taaggtgctatgttgtttggtattcat--------------gcatgtatgatcttagccagtcaatttctttgaagatgttaaatttggttccaaaattc |
291 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11444280 |
taaggtgctatgttgtttggtattcatatgcaactttcttaccatgtatgatcttagccagtcaatttctttgaagatgttaaatttggttccaaaattc |
11444181 |
T |
|
| Q |
292 |
ttccctttaccaatcttcagagactcaatttgtacttcttttcgtatatgcttcttgt |
349 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11444180 |
ctccttttaccaatcttcagagactcaatttgtacttcttttcgtatatgcttcttgt |
11444123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 11441604 - 11441377
Alignment:
| Q |
6 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11441604 |
agagagaagaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatc |
11441505 |
T |
|
| Q |
106 |
cttgatttt-gattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactgaataatgttaa |
204 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
11441504 |
cttaatttttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactgaatactgttaa |
11441405 |
T |
|
| Q |
205 |
ttaaggtgctatgttgtttggtattcat |
232 |
Q |
| |
|
||||||||||||||||| |||||||||| |
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| T |
11441404 |
ttaaggtgctatgttgtatggtattcat |
11441377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 11441326 - 11441211
Alignment:
| Q |
234 |
catgtatgatcttagccagtcaatttctttgaagatgttaaatttggttccaaaattcttccctttaccaatcttcagagactcaatttgtacttctttt |
333 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| |
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| T |
11441326 |
catgtatgatcttagccaatcaatttctttaaagatgataagtttggttccaaaattcatgcctttaccaatcttcagagacccaatttgtacttctttt |
11441227 |
T |
|
| Q |
334 |
cgtatatgcttcttgt |
349 |
Q |
| |
|
| || ||||||||||| |
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|
| T |
11441226 |
cctagatgcttcttgt |
11441211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 11508286 - 11508386
Alignment:
| Q |
6 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||| ||||| ||| |||||||||| |||| |
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| T |
11508286 |
agagagaagaaagaatgggagaaactcatattcgacgcaggtttcagcagctataagattacacctatatgcggtttcaagtctctcatcgaagtatatc |
11508385 |
T |
|
| Q |
106 |
c |
106 |
Q |
| |
|
| |
|
|
| T |
11508386 |
c |
11508386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 11524501 - 11524636
Alignment:
| Q |
6 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
105 |
Q |
| |
|
||||| |||||||||||| ||||||| || ||||| |||||||||||||| |||||| | || ||||| |||||||| ||| | || |||||||||| |
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| T |
11524501 |
agagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
11524600 |
T |
|
| Q |
106 |
cttgattttgattagaacttgtttcacttaagttat |
141 |
Q |
| |
|
||| ||| | ||||| | ||||| || |||||||| |
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|
| T |
11524601 |
cttaattctaattagtagttgttgcaaataagttat |
11524636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 11487827 - 11487941
Alignment:
| Q |
6 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
105 |
Q |
| |
|
||||| |||||||||||| ||||||| || ||||| |||||||||||||| |||||| | || ||||| |||||||| || |||| |||||||||| |
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| T |
11487827 |
agagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtcactcatagaagtttatc |
11487926 |
T |
|
| Q |
106 |
cttgattttgattag |
120 |
Q |
| |
|
| | ||||| ||||| |
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|
| T |
11487927 |
cctaattttaattag |
11487941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 11467372 - 11467270
Alignment:
| Q |
6 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
105 |
Q |
| |
|
||||| |||||||||||| ||||||| ||| || ||||| ||||| ||||| |||||| | || ||||| |||||||| ||| | || |||||||||| |
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|
| T |
11467372 |
agagaaaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
11467273 |
T |
|
| Q |
106 |
ctt |
108 |
Q |
| |
|
||| |
|
|
| T |
11467272 |
ctt |
11467270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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