View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19894_low_4 (Length: 253)

Name: NF19894_low_4
Description: NF19894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19894_low_4
NF19894_low_4
[»] chr4 (2 HSPs)
chr4 (10-238)||(34621690-34621912)
chr4 (148-185)||(41162203-41162240)
[»] chr8 (2 HSPs)
chr8 (141-176)||(31167861-31167896)
chr8 (139-184)||(7026605-7026650)
[»] chr7 (1 HSPs)
chr7 (141-176)||(31691271-31691306)
[»] chr5 (3 HSPs)
chr5 (146-185)||(14257346-14257385)
chr5 (145-183)||(30845201-30845239)
chr5 (146-186)||(11095603-11095643)
[»] chr2 (1 HSPs)
chr2 (141-176)||(6772696-6772731)
[»] chr1 (1 HSPs)
chr1 (141-176)||(6933118-6933153)
[»] chr6 (1 HSPs)
chr6 (146-187)||(30865355-30865396)
[»] chr3 (2 HSPs)
chr3 (141-185)||(2201000-2201044)
chr3 (144-176)||(4534500-4534532)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 34621690 - 34621912
Alignment:
Q  10 attatactcttccaaccaggatccacacctctcatgttaaaattcactattcactatggtgtgaaaattgtgtacattttatatttatatccaatgatgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  34621690 attatactcttccaaccaggatccacacctctcatgttaaaattcactat-------ggtgtgaaaattgtgtacattttatatttatatccaatgatgt 34621782  T
Q  110 a-aaaactgtgagtatcttttatctccaacacgactctgtttggataaacaacttaactaagcacttacaacataagttatttctacaacaaaagctata 208  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34621783 ataaaactgtgagtatcttttatctccaacatgactctgtttggataaacaacttaactaaacacttacaacataagttatttctacaacaaaagctata 34621882  T
Q  209 agctacattcatataaactataaattgttt 238  Q
    ||||||| ||||||||||||||||||||||    
T  34621883 agctacagtcatataaactataaattgttt 34621912  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 41162240 - 41162203
Alignment:
Q  148 tttggataaacaacttaactaagcacttacaacataag 185  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  41162240 tttggataaacaacttaattaagcacttataacataag 41162203  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 31167861 - 31167896
Alignment:
Q  141 gactctgtttggataaacaacttaactaagcactta 176  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31167861 gactctgtttggataaacaacttaattaagcactta 31167896  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 7026605 - 7026650
Alignment:
Q  139 acgactctgtttggataaacaacttaactaagcacttacaacataa 184  Q
    ||||| ||||||||||||||||||||| |||||| ||||| |||||    
T  7026605 acgaccctgtttggataaacaacttaattaagcatttacagcataa 7026650  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 31691306 - 31691271
Alignment:
Q  141 gactctgtttggataaacaacttaactaagcactta 176  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31691306 gactctgtttggataaacaacttaattaagcactta 31691271  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 14257346 - 14257385
Alignment:
Q  146 tgtttggataaacaacttaactaagcacttacaacataag 185  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  14257346 tgtttggataaacaacttaattaagcacttataacataag 14257385  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 30845201 - 30845239
Alignment:
Q  145 ctgtttggataaacaacttaactaagcacttacaacata 183  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  30845201 ctgtttggataaacaacttaattaagcacttataacata 30845239  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 11095643 - 11095603
Alignment:
Q  146 tgtttggataaacaacttaactaagcacttacaacataagt 186  Q
    |||||||||||||||||||||||| ||||||| | ||||||    
T  11095643 tgtttggataaacaacttaactaaacacttaccatataagt 11095603  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 6772731 - 6772696
Alignment:
Q  141 gactctgtttggataaacaacttaactaagcactta 176  Q
    ||||||||||||||||||||||||| ||||||||||    
T  6772731 gactctgtttggataaacaacttaattaagcactta 6772696  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 6933153 - 6933118
Alignment:
Q  141 gactctgtttggataaacaacttaactaagcactta 176  Q
    ||||||||||||||||||||||||| ||||||||||    
T  6933153 gactctgtttggataaacaacttaattaagcactta 6933118  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 30865355 - 30865396
Alignment:
Q  146 tgtttggataaacaacttaactaagcacttacaacataagtt 187  Q
    |||||||||||||||||||| |||||| ||| ||||||||||    
T  30865355 tgtttggataaacaacttaattaagcatttataacataagtt 30865396  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 2201000 - 2201044
Alignment:
Q  141 gactctgtttggataaacaacttaactaagcacttacaacataag 185  Q
    ||||||||| ||||||||||||||||||||| |||| | ||||||    
T  2201000 gactctgttaggataaacaacttaactaagcgcttatagcataag 2201044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 4534532 - 4534500
Alignment:
Q  144 tctgtttggataaacaacttaactaagcactta 176  Q
    |||||||||||||||||||||| ||||||||||    
T  4534532 tctgtttggataaacaacttaattaagcactta 4534500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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