View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19895_high_13 (Length: 319)
Name: NF19895_high_13
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19895_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 29195750 - 29195458
Alignment:
| Q |
17 |
agttcttgtgccaaaagattttctgcctagtttgttttctaaatgtcatcaacttgaggaactaaccttatggggatgcacattcgagtcttccatccat |
116 |
Q |
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| T |
29195750 |
agttcttgtgccaaaagattttctgcctagtttgttttctaaatgtcatcaacttgaggaactaaccttatggggatgcacattcgagtcttccatccat |
29195651 |
T |
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| Q |
117 |
attatcaatccaacgttgcgtcgtttgaatatagttgacttttacagtgtttcttggaacttagacattgatgcattgaatctaacttccttagactgtc |
216 |
Q |
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| T |
29195650 |
attatcaatccaacgttgcgtcgtttgaatatagttgacttttacagtgtttcttggaacttagacattgatgcattgaatctaacttccttagactgtc |
29195551 |
T |
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| Q |
217 |
gaggtcagatgaggatatgttctattaaagctcctcaattattgaatcttttttggaacgtaactaggaatgaagaaatcccacatgcctttg |
309 |
Q |
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| T |
29195550 |
gaggtcagatgaggatatgttctattaaagctcctcaattattgaatcttttttggaacgtaactaggaatgaagaaatcccacatgcctttg |
29195458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 29204672 - 29204884
Alignment:
| Q |
21 |
cttgtgccaaaagattttctgcctagtttgttttctaaatgtcatcaacttgaggaactaaccttatggggatgcacattcgagtcttccatccatatta |
120 |
Q |
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| T |
29204672 |
cttgtaccaaaatatgtcctgcctagtttgttttctaattgtcaccaacttgagga------------gggatgcacattcgagttttccatccatatta |
29204759 |
T |
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| Q |
121 |
tcaatccaacgttgcgtcgtttgaatatagttgacttttacagtgtttcttggaactta---gacattgatgcattgaatctaacttccttagactgtcg |
217 |
Q |
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| T |
29204760 |
tcagtccaacattgcgtcggttgagcataattgactttgacaatgttccttggaacttagacgacattgatgcattgaatataacttccttagactatag |
29204859 |
T |
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| Q |
218 |
aggtcagatgaggatatgttctatt |
242 |
Q |
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| T |
29204860 |
aggtcaaatgaggatatgttgtatt |
29204884 |
T |
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