View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19895_high_2 (Length: 609)

Name: NF19895_high_2
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19895_high_2
NF19895_high_2
[»] chr1 (7 HSPs)
chr1 (60-591)||(7583011-7583543)
chr1 (357-572)||(7098001-7098216)
chr1 (224-321)||(7097868-7097962)
chr1 (72-186)||(42747589-42747711)
chr1 (230-270)||(21516785-21516825)
chr1 (139-180)||(3121424-3121465)
chr1 (231-267)||(31117863-31117899)
[»] chr4 (7 HSPs)
chr4 (320-568)||(13615409-13615658)
chr4 (123-186)||(13615247-13615310)
chr4 (92-191)||(21501594-21501694)
chr4 (123-191)||(25885955-25886023)
chr4 (64-106)||(17425642-17425684)
chr4 (62-102)||(20435493-20435533)
chr4 (105-185)||(39276338-39276418)
[»] chr5 (6 HSPs)
chr5 (320-571)||(17981492-17981743)
chr5 (365-498)||(30202744-30202877)
chr5 (60-186)||(32882703-32882830)
chr5 (246-324)||(17981321-17981401)
chr5 (275-317)||(30202553-30202595)
chr5 (328-410)||(29710365-29710447)
[»] chr7 (3 HSPs)
chr7 (60-183)||(28175551-28175675)
chr7 (139-185)||(18654737-18654783)
chr7 (139-179)||(10097322-10097362)
[»] chr3 (8 HSPs)
chr3 (61-186)||(43822510-43822636)
chr3 (202-260)||(34778135-34778194)
chr3 (60-105)||(37334552-37334597)
chr3 (60-106)||(1384248-1384294)
chr3 (60-102)||(13799996-13800038)
chr3 (148-186)||(44560166-44560204)
chr3 (60-105)||(32582511-32582556)
chr3 (140-180)||(35682500-35682540)
[»] scaffold0040 (1 HSPs)
scaffold0040 (60-186)||(49874-49994)
[»] chr6 (1 HSPs)
chr6 (106-179)||(1288292-1288365)
[»] chr2 (1 HSPs)
chr2 (145-177)||(36625959-36625991)


Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 60 - 591
Target Start/End: Complemental strand, 7583543 - 7583011
Alignment:
Q  60 agattgcagggataaaattgagataaaaagtgaaaagttataagcttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaact 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583543 agattgcagggataaaattgagataaaaagtgaaaagttataagcttaagctacttgaacttacttatcaaataacacaataagctcataaaaataaact 7583444  T
Q  160 ataaactcgtgagaaaatgacagttacgaaatttgnnnnnnn-agtcatatgaacttataagttaataaaatataaaccacaagctcaaatatgtgtctt 258  Q
    |||| ||||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583443 ataagctcgtgagaaaatgacagttacgaaatatgttttttttagtcatatgaacttataagttaataaaatataaaccacaagctcaaatatgtgtctt 7583344  T
Q  259 accaaacagacctaaaagaaacacaatcaaaaggatggagggagaataaagagcctacctgttcaaacatctctgcttcttcattctaactaatgtcaag 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583343 accaaacagacctaaaagaaacacaatcaaaaggatggagggagaataaagagcctacctgttcaaacatctctgcttcttcattctaactaatgtcaag 7583244  T
Q  359 ttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgtcaatattgggcatccagcaatattcaacaaatcaagtgca 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583243 ttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgtcaatattgggcatccagcaatattcaacaaatcaagtgca 7583144  T
Q  459 gtgaggtgtctaataccatctggcaagcattttaatcttttacagcaataaatcctcatggattgtagtgattgcaaacctccccatattttctctggta 558  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583143 gtgaggtgtctaataccatctggcaagcattttaattttttacaacaataaatcctcatggattgtagtgattgcaaacctccccatattttctctggta 7583044  T
Q  559 aatactcaagctcatcgcaaaaagcgatattca 591  Q
    |||||||||||||||||||||||||||||||||    
T  7583043 aatactcaagctcatcgcaaaaagcgatattca 7583011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 357 - 572
Target Start/End: Original strand, 7098001 - 7098216
Alignment:
Q  357 agttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgtcaatattgggcatccagcaatattcaacaaatcaagtg 456  Q
    ||||||| |||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  7098001 agttttggaatatgggctatcttgtcccagtcttcccctgttccctccttgcatcgctccgtcaatgttgggcatccaacaatagtcaacgaatcaagtg 7098100  T
Q  457 cagtgaggtgtctaataccatctggcaagcattttaatcttttacagcaataaatcctcatggattgtagtgattgcaaacctccccatattttctctgg 556  Q
    | |||||||||||||||||||||||||||||||||||||||| |||  || |||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  7098101 cggtgaggtgtctaataccatctggcaagcattttaatctttcacaataagaaatcctcatagattgaagtgattgcagacctccccatattttctctgg 7098200  T
Q  557 taaatactcaagctca 572  Q
    ||||||||||||||||    
T  7098201 taaatactcaagctca 7098216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 7097868 - 7097962
Alignment:
Q  224 ataaaatataaaccacaagctcaaatatgtgtcttaccaaacaga-cctaaaagaaacacaatcaaaaggatggagggagaataaagagcctacctgtt 321  Q
    ||||| ||||||||  ||||||||||||||||||||| ||| ||| ||||||| || |||||| ||||||||    |||||||||||||||||||||||    
T  7097868 ataaactataaaccgtaagctcaaatatgtgtcttactaaatagaccctaaaataatcacaatgaaaaggat----ggagaataaagagcctacctgtt 7097962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 42747711 - 42747589
Alignment:
Q  72 taaaattgagataaaaagtgaaaagttataagctt--------aagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataa 163  Q
    ||||||||||||||||||||| ||| |||||||||        ||| |||||||| |  ||||| ||| ||||| |||||||||||||| ||| ||||||    
T  42747711 taaaattgagataaaaagtgataagctataagctttaagttataagttacttgaattagcttataaaaaaacactataagctcataaaattaagctataa 42747612  T
Q  164 actcgtgagaaaatgacagttac 186  Q
     || ||||| |||||||||||||    
T  42747611 gcttgtgagtaaatgacagttac 42747589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 21516785 - 21516825
Alignment:
Q  230 tataaaccacaagctcaaatatgtgtcttaccaaacagacc 270  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  21516785 tataagccataagctcaaatatgtgtcttaccaaacagacc 21516825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 3121465 - 3121424
Alignment:
Q  139 ataagctcataaaaataaactataaactcgtgagaaaatgac 180  Q
    ||||||| ||||||||||||||||||||| | ||||||||||    
T  3121465 ataagctaataaaaataaactataaactcataagaaaatgac 3121424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 31117863 - 31117899
Alignment:
Q  231 ataaaccacaagctcaaatatgtgtcttaccaaacag 267  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  31117863 ataagccataagctcaaatatgtgtcttaccaaacag 31117899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 320 - 568
Target Start/End: Original strand, 13615409 - 13615658
Alignment:
Q  320 ttcaaacatctctgcttctt-cattctaactaatgtcaagttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgt 418  Q
    ||||||||||||||||| || ||||||| | |||||  ||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||| ||| | |    
T  13615409 ttcaaacatctctgcttttttcattctatcgaatgtttagttttggaatatgcgctatcttgtcccagtcttcccatgttccctccttgcatcgcttctt 13615508  T
Q  419 caatattgggcatccagcaatattcaacaaatcaagtgcagtgaggtgtctaataccatctggcaagcattttaatcttttacagcaataaatcctcatg 518  Q
    |||| |||||||||||  |||||||||| ||||||||||| |||||||||||||||| || | || |||||||||| |   |||   || ||||  |||     
T  13615509 caatgttgggcatccaaaaatattcaacgaatcaagtgcaatgaggtgtctaataccgtccgacaggcattttaatttacgacaatgattaatcaccata 13615608  T
Q  519 gattgtagtgattgcaaacctccccatattttctctggtaaatactcaag 568  Q
    ||||| |||||||||  ||||||||||| |||||||||||||||||||||    
T  13615609 gattgaagtgattgccgacctccccataatttctctggtaaatactcaag 13615658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 13615247 - 13615310
Alignment:
Q  123 cttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttac 186  Q
    |||||| || ||||||||||  ||||||||||||  ||||||||||||||||||||||||||||    
T  13615247 cttatcgaaaaacacaataatatcataaaaataaggtataaactcgtgagaaaatgacagttac 13615310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 21501694 - 21501594
Alignment:
Q  92 aaaagttataagct-taagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttacgaaa 190  Q
    |||| ||||||||| |||| |||||||| |  ||||||||| ||||| ||| |||  ||||||||| |||||| ||||||||||| |||||||||| |||    
T  21501694 aaaaattataagctataagctacttgaattagcttatcaaaaaacactatatgctagtaaaaataagctataagctcgtgagaaagtgacagttaccaaa 21501595  T
Q  191 t 191  Q
    |    
T  21501594 t 21501594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 25886023 - 25885955
Alignment:
Q  123 cttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttacgaaat 191  Q
    ||||||||| ||||| ||||||| ||||||| || |||||| |||||| ||||||||||||||| ||||    
T  25886023 cttatcaaaaaacacgataagctaataaaaacaagctataagctcgtgtgaaaatgacagttacaaaat 25885955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 17425642 - 17425684
Alignment:
Q  64 tgcagggataaaattgagataaaaagtgaaaagttataagctt 106  Q
    ||||||| ||||||||||||||||||||| | |||||||||||    
T  17425642 tgcaggggtaaaattgagataaaaagtgataggttataagctt 17425684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 20435533 - 20435493
Alignment:
Q  62 attgcagggataaaattgagataaaaagtgaaaagttataa 102  Q
    |||| |||| ||||||||||||||||||||| |||||||||    
T  20435533 attgtaggggtaaaattgagataaaaagtgacaagttataa 20435493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 39276418 - 39276338
Alignment:
Q  105 ttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagtta 185  Q
    ||||| |||||||| |  ||||||||| |||   |||||||  |||||||||  ||||| |||||||||||||||||||||    
T  39276418 ttaagctacttgaattagcttatcaaaaaacgttataagctagtaaaaataagttataagctcgtgagaaaatgacagtta 39276338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 320 - 571
Target Start/End: Original strand, 17981492 - 17981743
Alignment:
Q  320 ttcaaacatctctgcttcttcattctaactaatgtcaagttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgtc 419  Q
    |||||||||||||||||  |||||||||  |||||  |||| || |||||| |||||||||| ||||||||| || |||||||  |||||| ||| |  |    
T  17981492 ttcaaacatctctgctttctcattctaaggaatgtgcagttctggaatatgggctatcttgtcccagtcttctccggttccctcattgcatcgcttctcc 17981591  T
Q  420 aatattgggcatccagcaatattcaacaaatcaagtgcagtgaggtgtctaataccatctggcaagcattttaatcttttacagcaataaatcctcatgg 519  Q
    ||| |||||||| ||  |||| | ||  ||||||||||||| |||||||||||||| || ||||||||||| ||| |  ||||   |  ||||  ||| |    
T  17981592 aatgttgggcatgcacgaatagttaatgaatcaagtgcagtaaggtgtctaataccgtccggcaagcatttcaatttcctacaatcaacaatcaccatag 17981691  T
Q  520 attgtagtgattgcaaacctccccatattttctctggtaaatactcaagctc 571  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  17981692 attgaagtgattgcagacctccccatattttctctggtaaatactcaagctc 17981743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 365 - 498
Target Start/End: Original strand, 30202744 - 30202877
Alignment:
Q  365 aatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgtcaatattgggcatccagcaatattcaacaaatcaagtgcagtgagg 464  Q
    |||||| |||||||||| |||||  ||||||||||||| ||||||| | ||| ||||||||||||| ||   |||  ||| ||||||||||| |||||||    
T  30202744 aatatgtgctatcttgtcccagttctcccctgttccctccttgcatcgttccttcaatattgggcaaccgaaaattgtcagcaaatcaagtgaagtgagg 30202843  T
Q  465 tgtctaataccatctggcaagcattttaatcttt 498  Q
    ||||||||||| ||| ||||||||||||||||||    
T  30202844 tgtctaataccttctagcaagcattttaatcttt 30202877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 32882830 - 32882703
Alignment:
Q  60 agattgcagggataaaattgagataaaaagtgaaaagttataagctt-aagatacttgaacttacttatcaaataacacaataagctcataaaaataaac 158  Q
    ||||||||||| ||||||||||||||||||||| ||| | ||||||| ||| |||||||| |   |||||||| ||||  ||||||||| |||||||| |    
T  32882830 agattgcaggggtaaaattgagataaaaagtgagaagctgtaagctttaagctacttgaattagtttatcaaaaaacattataagctcaaaaaaataagc 32882731  T
Q  159 tataaactcgtgagaaaatgacagttac 186  Q
    ||||| ||||||||||||||||| ||||    
T  32882730 tataagctcgtgagaaaatgacaattac 32882703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 17981321 - 17981401
Alignment:
Q  246 aaatatgtgtcttaccaaacagac-ctaaaagaaacacaatcaaaa-ggatggagggagaataaagagcctacctgttcaa 324  Q
    |||||| |||||||||||||  || ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  17981321 aaatatttgtcttaccaaacgaactctaaaagaaacacaatcaaaaaggatggagggagaataaagagcttacccgttcaa 17981401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 30202553 - 30202595
Alignment:
Q  275 agaaacacaatcaaaaggatggagggagaataaagagcctacc 317  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  30202553 agaaacataatcaaaaggatggcgggagaataaagagcctacc 30202595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 29710447 - 29710365
Alignment:
Q  328 tctctgcttcttcattctaactaatgtcaagttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcat 410  Q
    ||||| ||||||||| |||||||||||| | ||||| || |||||||||||||| | | || |||| || ||||| |||||||    
T  29710447 tctctacttcttcatcctaactaatgtctaattttggaacatgcgctatcttgtcctaatcctcccttgctccctccttgcat 29710365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 28175551 - 28175675
Alignment:
Q  60 agattgcagggataaaattgagataaaaagtgaaaagttataagct-taagatacttgaacttacttatcaaataacacaataagctcataaaaataaac 158  Q
    |||||| |||| ||||||| ||||||||||| |||||| ||||||| |||| |||||||  |  ||||||||| ||  | |||||||||||||||||| |    
T  28175551 agattgtaggggtaaaattcagataaaaagtaaaaagtgataagctataagctacttgagttagcttatcaaagaaagctataagctcataaaaataagc 28175650  T
Q  159 tataaactcgtgagaaaatgacagt 183  Q
    ||||||||| | |||||||||||||    
T  28175651 tataaactcattagaaaatgacagt 28175675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 18654737 - 18654783
Alignment:
Q  139 ataagctcataaaaataaactataaactcgtgagaaaatgacagtta 185  Q
    |||||||||||||||||| |||||||||| |||||||||||| ||||    
T  18654737 ataagctcataaaaataatctataaactcatgagaaaatgaccgtta 18654783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 10097322 - 10097362
Alignment:
Q  139 ataagctcataaaaataaactataaactcgtgagaaaatga 179  Q
    ||||||| |||||||||||| |||||||| |||||||||||    
T  10097322 ataagcttataaaaataaacaataaactcatgagaaaatga 10097362  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 61 - 186
Target Start/End: Complemental strand, 43822636 - 43822510
Alignment:
Q  61 gattgcagggataaaattgagataaaaagtgaaaagttataagc-ttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaact 159  Q
    |||||||||| |||||| |||||||||||||| ||| ||||||| ||||| |||||||| |  ||||||||| | ||| |||| ||||| ||||||| ||    
T  43822636 gattgcaggggtaaaatggagataaaaagtgacaagctataagctttaagctacttgaattagcttatcaaaaaccactataatctcatgaaaataagct 43822537  T
Q  160 ataaactcgtgagaaaatgacagttac 186  Q
    |||| || |||  ||||||||| ||||    
T  43822536 ataagcttgtgtaaaaatgacaattac 43822510  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 34778194 - 34778135
Alignment:
Q  202 agtcatatgaacttataagtta-ataaaatataaaccacaagctcaaatatgtgtcttac 260  Q
    |||||||||||||||||||||| ||||| ||||| ||| || ||||||||||||||||||    
T  34778194 agtcatatgaacttataagttatataaattataatccataaactcaaatatgtgtcttac 34778135  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 37334597 - 37334552
Alignment:
Q  60 agattgcagggataaaattgagataaaaagtgaaaagttataagct 105  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||||    
T  37334597 agattgcacggataaaattgagataaaaagcgaaaagctataagct 37334552  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 1384294 - 1384248
Alignment:
Q  60 agattgcagggataaaattgagataaaaagtgaaaagttataagctt 106  Q
    ||||||||| | ||||| ||||||||||||||| |||||||||||||    
T  1384294 agattgcagcggtaaaaatgagataaaaagtgataagttataagctt 1384248  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 13799996 - 13800038
Alignment:
Q  60 agattgcagggataaaattgagataaaaagtgaaaagttataa 102  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||    
T  13799996 agattgcaggggtaaaattgagataaaaagtgataagctataa 13800038  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 44560204 - 44560166
Alignment:
Q  148 taaaaataaactataaactcgtgagaaaatgacagttac 186  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  44560204 taaaaataaattataaactcgtgagaaaatgacggttac 44560166  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 32582556 - 32582511
Alignment:
Q  60 agattgcagggataaaattgagataaaaagtgaaaagttataagct 105  Q
    |||||||| || ||||||||||||||||||||| ||| ||||||||    
T  32582556 agattgcaagggtaaaattgagataaaaagtgataagctataagct 32582511  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 35682540 - 35682500
Alignment:
Q  140 taagctcataaaaataaactataaactcgtgagaaaatgac 180  Q
    |||||| ||||||||||||||||| || |||||||||||||    
T  35682540 taagctaataaaaataaactataagcttgtgagaaaatgac 35682500  T

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Target: scaffold0040 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 49874 - 49994
Alignment:
Q  60 agattgcagggataaaattgagataaaaagtgaaaagttataagcttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaact 159  Q
    |||||||| || ||||||||||||||||||||| ||| |||||||      |||||||| |  ||||||| | | | | |||||||| ||||||||| ||    
T  49874 agattgcaagggtaaaattgagataaaaagtgataagctataagc------tacttgaattagcttatcacaaaccgctataagctcttaaaaataagct 49967  T
Q  160 ataaactcgtgagaaaatgacagttac 186  Q
    |||| ||||||||||| |||| |||||    
T  49968 ataagctcgtgagaaagtgaccgttac 49994  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 1288365 - 1288292
Alignment:
Q  106 taagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatga 179  Q
    ||||||||||||| | |||||||||| ||||  |||||||||| | ||||| |||| ||||||||  |||||||    
T  1288365 taagatacttgaattaacttatcaaaaaacattataagctcatgagaataagctatgaactcgtgtaaaaatga 1288292  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 36625959 - 36625991
Alignment:
Q  145 tcataaaaataaactataaactcgtgagaaaat 177  Q
    |||||||||||||||||| ||||||||||||||    
T  36625959 tcataaaaataaactatatactcgtgagaaaat 36625991  T

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