View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19895_high_7 (Length: 444)
Name: NF19895_high_7
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19895_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 160 - 426
Target Start/End: Complemental strand, 22835610 - 22835343
Alignment:
| Q |
160 |
tccatttttcaattcactcaaacccaaattgaaagagaaaactagaaaaa-gtgtttgatatttcctctaatgagacctaattattcaagatgacaagtg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22835610 |
tccatttttcaattcactcaaacccaaattgaaagagaaaactagaaaaaagtgtttgatatttcctctaatgagacctaattattcaagatgacaagtg |
22835511 |
T |
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| Q |
259 |
tttttcaacataagaatatcactcaaaaaccctcaaccctcacccacaacaactaggtcaaaaattgcattttatagttgtaaatcccgagtaaattacc |
358 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22835510 |
tttttcaacataagaatatcactcaaaaacactcaaccctcacccacaacaactaggtcaaaaattgcattttatagttgtaaatcccgagtaaattacc |
22835411 |
T |
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| Q |
359 |
cagcattttgcctccatcgcctcgtgatttgccaacagattaatgtgaccgatggaacatgtggctcg |
426 |
Q |
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| T |
22835410 |
cagcaatttgcctccatcgcctcgtgatttgccaacaaattaatgtgaccgatggaacatgtggctcg |
22835343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 22835850 - 22835690
Alignment:
| Q |
7 |
acatcatcaacaacaacagacctagttactaagcaaaacaaatctacaagtataaccaaagcataaat----tatagtagagtagagaaacaacatatca |
102 |
Q |
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| T |
22835850 |
acatcatcaacaacaacagacctagttactaagcaaaacaaatctacaagtataaccaaagcataaatatagtatagtagagtagagaaacaacatatca |
22835751 |
T |
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| Q |
103 |
atatttgtttacctaattcagccaaaaatgacctacgtttggggaagagagaagccctcca |
163 |
Q |
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| T |
22835750 |
atatttgtttacctaattcggccaaaaatgacctacgtttggggaagagagaaaccctcca |
22835690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 426
Target Start/End: Complemental strand, 22886927 - 22886811
Alignment:
| Q |
306 |
aacaactaggtcaaaaattgcattttatagttgtaaatcccgagtaaattacccagcattttgcctccatcgcctcgtgatttgccaacagattaatgtg |
405 |
Q |
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|||||| ||||| ||||||| ||||||||| ||| |||| |||||||||||||| | |||||||||||| || | ||||||||||| ||||| |
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| T |
22886927 |
aacaaccaggtctaaaattgtattttatagctgtcaatcacgagtaaattacccggtgatttgcctccatctccctgcaatttgccaaca----catgtg |
22886832 |
T |
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| Q |
406 |
accgatggaacatgtggctcg |
426 |
Q |
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| T |
22886831 |
accgatggaacatgtggctcg |
22886811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 22887101 - 22887021
Alignment:
| Q |
160 |
tccatttttcaattcactcaaacccaaattgaaa------gagaaaactagaaaaagtgtttgatatttcctctaatgaga |
234 |
Q |
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|||||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
22887101 |
tccatttttcaagtcactaaaacctaaattgagatctaaggagaaaactagaaaaagagtttgatatttactctaatgaga |
22887021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 21149166 - 21149308
Alignment:
| Q |
11 |
catcaacaacaacagacctagttactaagcaaaacaaatctacaagtataaccaaagcataaattatagtagagtagagaaacaacatatcaatatttgt |
110 |
Q |
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|||||||||||||| |||||||| ||||||| | |||||| |||| ||||||||| ||||||| |||| |||||| ||||||||||||||||||||||| |
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| T |
21149166 |
catcaacaacaacatacctagttcctaagcatagcaaatccacaaccataaccaaaacataaat-ataggagagtaaagaaacaacatatcaatatttgt |
21149264 |
T |
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| Q |
111 |
ttacctaattcagccaaaaatgacctacgtttggggaagagagaa |
155 |
Q |
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||| ||| ||| ||| |||||||| ||| |||||||||||||||| |
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| T |
21149265 |
ttatctagttctgcccaaaatgacatac-tttggggaagagagaa |
21149308 |
T |
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