View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19895_high_8 (Length: 432)
Name: NF19895_high_8
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19895_high_8 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Complemental strand, 36980182 - 36979768
Alignment:
| Q |
10 |
ataatacttcaggttatatcaattatataaatattttttcgtgcatgtctctaaaggcatgtatcatggcttttcataaaatttgttaactggacttaaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36980182 |
ataatacttcaggttatatcaattatataaatattttttcgtgcatgtctctaaaggcatgtatcatggcttttcataa--tttgttaactggacttaaa |
36980085 |
T |
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| Q |
110 |
tttcttattgtaaggacttgtattatggttgatctttctatctggatcccactttgcatataaatgatgtaactatcatgttgtcgtaacttttttgtgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36980084 |
tttcttattgtaaggacttgtattatggttgatctttctatctggatcccactttgcatataaatgatgtaactatcatgttgtcgtaacatttttgtgt |
36979985 |
T |
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| Q |
210 |
ttgtaattgttggctggtttatatgagtgaaacactttaatgtaaggatagagtttattttgacattgtaattgtttcataagtattctctcatttgtgg |
309 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36979984 |
ttgt------tggctggtttatatgagtgaaacactttaatgtaaggatagagtttattttgacattgtaattgtttcataagtattctctcatttgtgg |
36979891 |
T |
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| Q |
310 |
ataccatagcatgcttttatctttggattgaccatttcaaatttaaaagtgacatgcaattttatggattttaatcggcggcaattaattgccgatgatc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
36979890 |
ataccatagcatgcttttatctttggattgaccatttcaaatttaaaagtgacatgcaattttatggattttaatcggcggcaattaattgccgattaac |
36979791 |
T |
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| Q |
410 |
atttacgtctttttctggtgtgt |
432 |
Q |
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| T |
36979790 |
atttacgtctttttctggtgtgt |
36979768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 39028189 - 39028244
Alignment:
| Q |
377 |
attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgt |
432 |
Q |
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||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||| |
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| T |
39028189 |
attttaaccggcggcagttaactgccgatgaacatttacgtctttttctggtgtgt |
39028244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 388 - 432
Target Start/End: Complemental strand, 5897652 - 5897608
Alignment:
| Q |
388 |
cggcaattaattgccgatgatcatttacgtctttttctggtgtgt |
432 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
5897652 |
cggcaattaattgctgatgtgcatttacgtctttttctggtgtgt |
5897608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 27177029 - 27177077
Alignment:
| Q |
377 |
attttaatcggcggcaattaattgccgatgatcatttacgtctttttct |
425 |
Q |
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| T |
27177029 |
attttaatcggcggcagttaactgtcgatgaacatttacgtctttttct |
27177077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 432
Target Start/End: Complemental strand, 33900188 - 33900133
Alignment:
| Q |
377 |
attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgt |
432 |
Q |
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||||||| |||||||| |||| | || |||| |||||||||||||||||||||||| |
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| T |
33900188 |
attttaaccggcggcagttaactaccaatgagcatttacgtctttttctggtgtgt |
33900133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 432
Target Start/End: Original strand, 31645172 - 31645231
Alignment:
| Q |
373 |
atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgt |
432 |
Q |
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||||||||||| || ||||| |||| |||||||| |||||||| || ||||||||||||| |
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| T |
31645172 |
atggattttaaccgacggcagttaactgccgatggtcatttacttcattttctggtgtgt |
31645231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 432
Target Start/End: Original strand, 45073262 - 45073321
Alignment:
| Q |
373 |
atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgt |
432 |
Q |
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||||||||||| |||||||| |||| |||||||| ||||||| ||||||||| |||||| |
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| T |
45073262 |
atggattttaaccggcggcagttaactgccgatggacatttacatctttttctagtgtgt |
45073321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 432
Target Start/End: Original strand, 12037358 - 12037417
Alignment:
| Q |
373 |
atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgt |
432 |
Q |
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||||||||||| || ||| | |||| |||| |||| |||||||||||||||||||||||| |
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| T |
12037358 |
atggattttaaccgacggtagttaactgccaatgaacatttacgtctttttctggtgtgt |
12037417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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