View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19895_low_1 (Length: 1996)
Name: NF19895_low_1
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19895_low_1 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 1609; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1609; E-Value: 0
Query Start/End: Original strand, 21 - 1791
Target Start/End: Original strand, 48798268 - 48800051
Alignment:
| Q |
21 |
ctcttctgctattcaatatcattgcctgcttagttcttggcaacaatcctaaatgacactcattttaatttgggtttattcacatttggatataatactg |
120 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798268 |
ctcttccgctattcaatatcattgcctgcttagttcttggcaacaatcctaaatgacactcattttaatttgggtttattcacatttggatataatactg |
48798367 |
T |
|
| Q |
121 |
tagcatcgtttggtttatactttaatcttatacaataagacgcggctttt-----tgttctatcgtttgtatgcttgagatttgtactttaacccctaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798368 |
tagcatcgtttggtttatactttaatcttatacaataagacgcggcttttgtttttgttgtatcgtttgtatgcttgagatttgtactttaacccctaag |
48798467 |
T |
|
| Q |
216 |
tctatgaagttaatctatgatgccagactgccagttaggctttgcaagaaaagctatgatgctagttaggcttcggggaaggtggaactaaagtattgtt |
315 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798468 |
tctatgaagttaatctatgatgcc--------agttaggctttgcaagaaaagctatgatgctagttaggcttcggggaaggtggaactaaagtattgtt |
48798559 |
T |
|
| Q |
316 |
gaaataagattctagttaggaagctaagtattgtttgacttgtctatagtgatccggagcaatcataaaaggaagttagcatgcaaagcaatgccagttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798560 |
gaaataagattctagttaggaagctaagtattgtttgacttgtctatagtgatccggagcaatcataaaaggaagttagcatgcaaagcaatgccagttt |
48798659 |
T |
|
| Q |
416 |
cgataagatgtgagcaaaacaccaaggatgggaacggtttggatgtatggcttggccgggtagccatggttggttttgcagtagccattactgttgaaat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798660 |
cgataagatgtgagcaaaacaccaaggatgggaatggtttggatgtatggcttggccgggtagccatggttggttttgcagtagccattactgttgaaat |
48798759 |
T |
|
| Q |
516 |
tacttcaggaaaaggactcctagaggtatatttgcacaccataacgtaaactttgagttactttatgcatgacttagactgcaatcacttgtcttcaatc |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798760 |
tacttcaggaaaaggactcctagaggtatatttgcacaccataacgtaaactttgagttactttatgcatgacttagactgcaatcacttgtcttcaatc |
48798859 |
T |
|
| Q |
616 |
ttttaagtcatgaaacaaattataatttccatcaaatgattgataattggcttatatgtttttctttctatcacccctatttgtcaaaactcaaatgttt |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798860 |
ttttaagtcatgaaacaaattataatttccatcaaatgattgataattggcttatatgtttttctttctatcacccctatttgtcaaaactcaaatgttt |
48798959 |
T |
|
| Q |
716 |
gctttgatattttagctgcaatatggtaatcttcctttctcctttactttatagtgtgtatggtatctagttgtaaaattaagctatgtgtctgttcatg |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798960 |
gctttgatattttagctgcaatatggtaatcttcctttctcctttactttatagtgtgtatggtatctagttgtaaaattaagctatgtgtctgttcatg |
48799059 |
T |
|
| Q |
816 |
atcttttaagctattgagttggtgtagtgatatataggttcatataactttctgaatctatgatgcatctaaaaaagtaaattagaaacttccaagtgag |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48799060 |
atcttttaagctattgagttggtgtagtgatatataggttcatataactttctgaatctatgatgcatctaaaaaagtaaattagaaacttccaagtgag |
48799159 |
T |
|
| Q |
916 |
tgcaagtttcaacgcgctgaaaccgtaacgaactttattatgttttgactttgatactccttactcatcttaacctctcttatcactcag---------- |
1005 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48799160 |
tgcaagtttcaacgcgctgaaaccgtaacgaactttattatgttttgactttgatactccttactcatcttaacctctcttatcactcaggttaggtagt |
48799259 |
T |
|
| Q |
1006 |
----------agaattgcaaaagaataacaacaatattcttgtactttgattttgtagaactttggactcacaagtccactgcctacagttgccttggcc |
1095 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48799260 |
tgttataagcagaattgcaaaagaataacaacaatattcttgtactttgattttgtagaactttggactcacaagtccactgcctacagttgccttggcc |
48799359 |
T |
|
| Q |
1096 |
gtaacaggactggtgggtgtcttgacagcagttttcatcttccagtcagcctcagagaactgattaaattaggctggttgtgtttgatgtaaattctgta |
1195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48799360 |
gtaacaggactggtgggtgtcttgacagcagttttcatcttccagtcagcctcagagaactgattaaattaggctggttgtgtttgatgtaaattctgta |
48799459 |
T |
|
| Q |
1196 |
gtttcaaatggagtttcatttcttcaagcaacattttatcacaattttcttgtaatattattcttggtgaagagaatgaattggcatcattaatcatgtt |
1295 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48799460 |
gtttcaaatggagtttcattttttcaagcaacattttatcacaattttcttgtaatattattcttggtgaaga----gaattggcatcattaatcatgtt |
48799555 |
T |
|
| Q |
1296 |
aaattttttggaagccttaattggatgaatccaagtcaatgtttattttttgcaagatacgtgtaaatacttataagatatgcaatcaaagaacctttct |
1395 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48799556 |
aaaatttttggaagccttaattggatgaatccaagtcaatgtttattttttgcaagatacatgtaaatacttataagatatgcaatcaaagaacctttcg |
48799655 |
T |
|
| Q |
1396 |
ctctctaaactaaaacctgtgccctctctctaaaacagatcgcggctccttctccttcaaatccaacaacactttctcaagatgtagaccatatgacggt |
1495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48799656 |
ctctctaaactaaaacctgtgccctctctctaaaacagatcgcggttccttctccttcaaatccaacaacactttctcaagatgtagaccatatgacggt |
48799755 |
T |
|
| Q |
1496 |
ggtgcgatgaggcgcggcctccgcaccacctcagctccggcgacgtgtttctcctgctgctccaccaacgtccttcatcctttcccggcggttgctctat |
1595 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |
|
|
| T |
48799756 |
ggtgcgatgaggcgcggcctccacaccacctcagctccggcgacgtgtttctcctgctgctccaccgacgtccttcatccttttccggcggttgctttat |
48799855 |
T |
|
| Q |
1596 |
agatcaactttcttgccgacgtcagatccggtgtgtcttttcggatctgttcattggttttggtggttgtgtcttctcggatctgttcttccggcttgat |
1695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48799856 |
agatcaactttcttgccgacgtcagatccggtgtgtcttttcggatctgttcattggttttggtggttgtgtcttctcggatctgttcttccggcttgct |
48799955 |
T |
|
| Q |
1696 |
ggggtgggtggtggtgccgccgtcgctggtggcgttttgacaggtttagcagcacatctcacggtggtgcggtttggttcgtggtggcttccggga |
1791 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48799956 |
ggggtgggtggtggtgccgccgtcgctggtggcgttttgacaggtttagcagcacatctcacggtggagcggtttggttcgtggtggcttccggga |
48800051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-32
Query Start/End: Original strand, 1865 - 1996
Target Start/End: Original strand, 4304769 - 4304901
Alignment:
| Q |
1865 |
cggatctgcttggtggccgttttgcggcggttgttgttcagtttcgcggtggttaagcttccttcctttagct-cgttttcagattcgttgccctttagg |
1963 |
Q |
| |
|
||||| ||||| ||||||||||| |||||| |||||||||| | ||||||||||||| |||||||||||||| |||||| |||||||||||| ||| || |
|
|
| T |
4304769 |
cggatttgcttagtggccgttttacggcggctgttgttcagatctgcggtggttaagcctccttcctttagctccgtttttagattcgttgcctttttgg |
4304868 |
T |
|
| Q |
1964 |
attccggcggccatttgtttccggcagcatctc |
1996 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |
|
|
| T |
4304869 |
attccggcgaccatttgtttccgacagcatctc |
4304901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-29
Query Start/End: Original strand, 1862 - 1996
Target Start/End: Original strand, 7702641 - 7702775
Alignment:
| Q |
1862 |
atccggatctgcttggtggccgttttgcggcggttgttgttcagtttcgcggtggttaagcttccttcctttagct-cgttttcagattcgttgcccttt |
1960 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||| | ||||||||||| | |||||||||||| | ||||||||||||||||||| ||| |
|
|
| T |
7702641 |
atccggatttgcttggtggccgttttgcggcggctgttgttcagatctgcggtggttaa-cctccttcctttagttccgttttcagattcgttgcctttt |
7702739 |
T |
|
| Q |
1961 |
aggattccggcggccatttgtttccggcagcatctc |
1996 |
Q |
| |
|
||||||| | | ||||||||||||| ||||||||| |
|
|
| T |
7702740 |
tggattccagagaccatttgtttccgacagcatctc |
7702775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 1476 - 1537
Target Start/End: Original strand, 38148684 - 38148746
Alignment:
| Q |
1476 |
gatgtaga-ccatatgacggtggtgcgatgaggcgcggcctccgcaccacctcagctccggcg |
1537 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
38148684 |
gatgtagatccaaatggcggtggtgcgatgaggtgcggcctccgcatcacctcacctccggcg |
38148746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1472 - 1520
Target Start/End: Original strand, 13994500 - 13994549
Alignment:
| Q |
1472 |
tcaagatgtaga-ccatatgacggtggtgcgatgaggcgcggcctccgca |
1520 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| ||||||||||| |
|
|
| T |
13994500 |
tcaagatgtagatccttatgacggtggtgcgatgaggcacggcctccgca |
13994549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1476 - 1528
Target Start/End: Complemental strand, 36594303 - 36594250
Alignment:
| Q |
1476 |
gatgtaga-ccatatgacggtggtgcgatgaggcgcggcctccgcaccacctca |
1528 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36594303 |
gatgtagatccaaatgatggtggtgcgatgaggcgcggcctccgcaacacctca |
36594250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University