View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19895_low_10 (Length: 405)

Name: NF19895_low_10
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19895_low_10
NF19895_low_10
[»] chr8 (7 HSPs)
chr8 (13-371)||(9780353-9780712)
chr8 (9-183)||(42456827-42457001)
chr8 (13-100)||(40832895-40832982)
chr8 (51-170)||(41581071-41581190)
chr8 (64-105)||(32703246-32703287)
chr8 (80-155)||(31645162-31645237)
chr8 (43-118)||(38137460-38137536)
[»] chr2 (8 HSPs)
chr2 (4-183)||(27249740-27249919)
chr2 (9-154)||(5357578-5357723)
chr2 (8-183)||(25271726-25271901)
chr2 (17-106)||(6069193-6069282)
chr2 (49-98)||(14389326-14389375)
chr2 (18-66)||(12037297-12037345)
chr2 (18-80)||(29699585-29699647)
chr2 (49-159)||(29923866-29923976)
[»] chr4 (6 HSPs)
chr4 (6-141)||(24699390-24699525)
chr4 (9-117)||(12868411-12868519)
chr4 (9-183)||(18489601-18489774)
chr4 (9-154)||(9672096-9672241)
chr4 (12-153)||(21512002-21512143)
chr4 (134-182)||(28752971-28753019)
[»] chr3 (7 HSPs)
chr3 (9-185)||(51380940-51381112)
chr3 (47-141)||(27844642-27844736)
chr3 (14-139)||(31984408-31984532)
chr3 (9-158)||(39028104-39028253)
chr3 (17-174)||(54524930-54525087)
chr3 (54-123)||(2395836-2395906)
chr3 (9-131)||(48723331-48723453)
[»] chr6 (5 HSPs)
chr6 (9-154)||(21610999-21611144)
chr6 (9-154)||(33629344-33629488)
chr6 (49-103)||(33929934-33929988)
chr6 (9-66)||(3445463-3445520)
chr6 (17-183)||(27176952-27177118)
[»] chr1 (3 HSPs)
chr1 (9-139)||(68935-69064)
chr1 (17-183)||(46915909-46916075)
chr1 (17-117)||(22023126-22023227)
[»] chr5 (3 HSPs)
chr5 (17-183)||(10315703-10315869)
chr5 (94-183)||(37283665-37283753)
chr5 (17-66)||(37283758-37283807)
[»] chr7 (1 HSPs)
chr7 (17-66)||(5897660-5897709)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 371
Target Start/End: Original strand, 9780353 - 9780712
Alignment:
Q  13 aatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgacagat 112  Q
    |||| |||||||| ||||||||||| ||| |||||| ||||||||||||||||| |||||||  |||||||||||||||  ||||||||||||||||| |    
T  9780353 aatactgttcacacttcactcaatgctagaaaatataagtaatttatcaatataacatcatcgatagttaactgccgatgaattttaaccgacgacagtt 9780452  T
Q  113 aactgcagatggatatttatgtctttttcagatgtgtttcagtcttagttgaagtgtatacatcaatttt-cgtgtcattgttgttgccaaatgtcaaga 211  Q
    |||||| |||| |||||||| |||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9780453 aactgctgatgaatatttatatctttttctggtatgtttcagtcttagttgaagtgtatacatcaatttttcgtgtcattgttgttgccaaatgtcaaga 9780552  T
Q  212 gttggcttattagcttttgaacatgattgaaaactattgatagttttatcactttaagaattgcatgaacaaccatctaaatcttatccttttcactttg 311  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9780553 gttggcttattagcttttgagcatgattgaaaactactgatagttttatcactttaagaatggcatgaacaaccatctaaatcttatccttttcactttg 9780652  T
Q  312 tattttcatttgaatccaatcccacgtaacatgatttggctctttactattatgatttat 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9780653 tattttcatttgaatccaatcccacgtaacatgatttggctctttactattatgatttat 9780712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 42457001 - 42456827
Alignment:
Q  9 gaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgac 108  Q
    ||||||| ||||||||| |||||| |||| ||||||| | |||||||||| ||||||| | ||||| ||| ||| |||  ||| ||||||||||||||      
T  42457001 gaagaatgttgttcacacttcacttaatgctaggaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccgacggt 42456902  T
Q  109 agataactgcagatggatatttatgtctttttcagatgtgtttcagtcttagttgaagtgtatacatcaattttc 183  Q
    || ||| ||  |||||| | ||| ||||||||| ||||| |||||| |||  | |||||||||||| ||||||||    
T  42456901 agttaattgtcgatggacaattacgtctttttctgatgtatttcagccttgttagaagtgtatacagcaattttc 42456827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 40832895 - 40832982
Alignment:
Q  13 aatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaa 100  Q
    ||||||||||||| |||||| ||| ||||||||||  ||||||||| ||||||| | ||||| ||||||| ||| ||||  |||||||    
T  40832895 aatattgttcacacttcactaaatattaggaaatactagtaatttaccaatataacctcatcggtagttacctgtcgatgaattttaa 40832982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 170
Target Start/End: Original strand, 41581071 - 41581190
Alignment:
Q  51 gtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgacagataactgcagatggatatttatgtctttttcagatgtgtt 150  Q
    |||||||||||||||| | ||||||  |||||||| |||||  ||||||| | ||||||  ||||||  |||||| ||||| |||||||||   ||||||    
T  41581071 gtaatttatcaatataacttcatcaacagttaactaccgatgaattttaatctacgacacttaactgtcgatggacatttacgtctttttctagtgtgtt 41581170  T
Q  151 tcagtcttagttgaagtgta 170  Q
    |||| |||  ||||||||||    
T  41581171 tcagccttgtttgaagtgta 41581190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 32703246 - 32703287
Alignment:
Q  64 atagcatcatcagtagttaactgccgattgattttaaccgac 105  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  32703246 atagcatcatcggtagttaactgccgatagattttaaccgac 32703287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 31645162 - 31645237
Alignment:
Q  80 ttaactgccgattgattttaaccgacgacagataactgcagatggatatttatgtctttttcagatgtgtttcagt 155  Q
    |||||||||||| |||||||||||||| ||| ||||||| |||||  |||||  || ||||| | |||||||||||    
T  31645162 ttaactgccgatggattttaaccgacggcagttaactgccgatggtcatttacttcattttctggtgtgtttcagt 31645237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 38137460 - 38137536
Alignment:
Q  43 aaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgatttt-aaccgacgacagataactgc 118  Q
    ||||| ||||||||||  |||||| | ||||| |||||||| ||||||| |||||| ||||||||| || |||||||    
T  38137460 aaataccagtaatttacaaatataacctcatcggtagttaattgccgatagatttttaaccgacgatagttaactgc 38137536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 27249919 - 27249740
Alignment:
Q  4 atgtcgaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccg 103  Q
    |||| ||||||| ||||||||| ||||||||||||||||||| |  ||||||||||||||||| | ||||||  |||||||  ||||| ||||||||| |    
T  27249919 atgtggaagaatgttgttcacacttcactcaatgttaggaaacactagtaatttatcaatataacttcatcatcagttaaccaccgatggattttaacag 27249820  T
Q  104 acgacagataactgcagatggatatttatgtctttttcagatgtgtttcagtcttagttgaagtgtatacatcaattttc 183  Q
     || ||| ||||||| |||||| |||||  |||||||| | |||||||||| |||  |||||||||||||| ||||||||    
T  27249819 gcggcagttaactgccgatggacatttacatctttttccggtgtgtttcagccttgtttgaagtgtatacaacaattttc 27249740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 5357723 - 5357578
Alignment:
Q  9 gaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgac 108  Q
    ||||||| ||||||||| |||||||||||||   ||| |  ||||||||| ||||||| | ||||| | ||||||||| |||| || |||||||| | ||    
T  5357723 gaagaatgttgttcacacttcactcaatgttgaaaaacactagtaatttaccaatataacctcatcggcagttaactgtcgatggaatttaaccggcaac 5357624  T
Q  109 agataactgcagatggatatttatgtctttttcagatgtgtttcag 154  Q
    || ||||||  |||||| ||||| |||||||||   ||||||||||    
T  5357623 agttaactgtcgatggacatttacgtctttttctagtgtgtttcag 5357578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 25271726 - 25271901
Alignment:
Q  8 cgaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacga 107  Q
    |||||||| ||||||||| ||||||| || |||| ||| |  ||||||||||  ||||| | |  || ||||||||||||||||  ||||||| |  ||     
T  25271726 cgaagaatgttgttcacacttcactcgatattagaaaacactagtaatttattcatataactttgtcggtagttaactgccgatgaattttaaacagcgg 25271825  T
Q  108 cagataactgcagatggatatttatgtctttttcagatgtgtttcagtcttagttgaagtgtatacatcaattttc 183  Q
    ||| |||| || ||| ||  |||| ||||||||| |||||||||||| |||  |||||||||| ||| ||||||||    
T  25271826 cagttaaccgccgatagacctttacgtctttttctgatgtgtttcagccttgtttgaagtgtaaacaacaattttc 25271901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 6069282 - 6069193
Alignment:
Q  17 ttgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacg 106  Q
    ||||||||| |||| ||||| | |||||||  ||||||||||||||||||   |||||   ||||||||||||||  |||||||||||||    
T  6069282 ttgttcacacttcattcaatataaggaaatcccagtaatttatcaatataatctcatcgacagttaactgccgatgaattttaaccgacg 6069193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 14389326 - 14389375
Alignment:
Q  49 cagtaatttatcaatatagcatcatcagtagttaactgccgattgatttt 98  Q
    ||||||||||  |||||| | |||||||||||||||||||||||||||||    
T  14389326 cagtaatttactaatataacctcatcagtagttaactgccgattgatttt 14389375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 12037297 - 12037345
Alignment:
Q  18 tgttcacatttcactcaatgttaggaaatatcagtaatttatcaatata 66  Q
    |||||||| ||||||||||| ||||||| | ||||||||||||||||||    
T  12037297 tgttcacacttcactcaatgctaggaaacaccagtaatttatcaatata 12037345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 29699647 - 29699585
Alignment:
Q  18 tgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagt 80  Q
    |||||||| ||||||||||||||||||| |  ||||||||| ||||||| | ||||| |||||    
T  29699647 tgttcacacttcactcaatgttaggaaacactagtaatttaccaatataacctcatcggtagt 29699585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 29923976 - 29923866
Alignment:
Q  49 cagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgacagataactgcagatggatatttatgtctttttcagatgtg 148  Q
    ||||||||||  |||||| | ||||| | |||||| ||| ||| ||||||||||| || ||| ||||||  |||  | ||||||||||||||| | ||||    
T  29923976 cagtaatttactaatataacctcatcggcagttaattgctgatggattttaaccggcggcagttaactgtcgataaacatttatgtctttttctgttgtg 29923877  T
Q  149 tttcagtctta 159  Q
    |||||| ||||    
T  29923876 tttcagcctta 29923866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 24699525 - 24699390
Alignment:
Q  6 gtcgaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgac 105  Q
    |||||||||| || |||||| |||| |||||  ||||||| |  ||||||||||||| ||| ||||||| |||||||||||||||| ||||||||| | |    
T  24699525 gtcgaagaatgttcttcacacttcaatcaattctaggaaacactagtaatttatcaacataacatcatcggtagttaactgccgatggattttaactggc 24699426  T
Q  106 gacagataactgcagatggatatttatgtctttttc 141  Q
    | ||| ||||||  |||||| ||||| |||||||||    
T  24699425 ggcagttaactggcgatggacatttacgtctttttc 24699390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 12868411 - 12868519
Alignment:
Q  9 gaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgac 108  Q
    ||||||| ||||||||| ||||||||||||||| ||| || |||||||||||||||||   ||||||  |||||||| |||||  |||| ||||||||||    
T  12868411 gaagaatgttgttcacacttcactcaatgttagaaaacattagtaatttatcaatataatctcatcatcagttaactaccgatgaatttaaaccgacgac 12868510  T
Q  109 agataactg 117  Q
    || ||||||    
T  12868511 agttaactg 12868519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 18489601 - 18489774
Alignment:
Q  9 gaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgac 108  Q
    ||||||| ||||||| | |||||||||||||| |||| |  ||||||||| |||||||   ||||| | |||||||||| ||| |||||||||||||| |    
T  18489601 gaagaatgttgttcatacttcactcaatgttaagaaacactagtaatttaccaatataatttcatcggcagttaactgctgatggattttaaccgacggc 18489700  T
Q  109 agataactgcagatggatatttatgtctttttcagatgtgtttcagtcttagttgaagtgtatacatcaattttc 183  Q
    || ||||||  ||| || ||||||||||||||| | ||| |||||  |||  | |||||||  ||||||||||||    
T  18489701 agttaactg-tgatagacatttatgtctttttctggtgtatttcaaccttgttagaagtgttaacatcaattttc 18489774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 9672096 - 9672241
Alignment:
Q  9 gaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgac 108  Q
    ||||||| ||||||| | |||||| |||| ||||||||||  |||||||  ||||||| | ||||| | ||||||| | | || ||||||||||||||||    
T  9672096 gaagaatgttgttcatacttcacttaatgctaggaaatattggtaatttcccaatataacttcatcggcagttaacagtcaatggattttaaccgacgac 9672195  T
Q  109 agataactgcagatggatatttatgtctttttcagatgtgtttcag 154  Q
    || ||||| | |||||  ||||  ||||||||| ||||||||||||    
T  9672196 agttaactaccgatgggcattttcgtctttttctgatgtgtttcag 9672241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 21512002 - 21512143
Alignment:
Q  12 gaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgacaga 111  Q
    |||| ||||||||| ||||||||||| ||||||| |  | ||||||||||||||| | | ||| | |||||||||  |||  |||||||||| |  |||     
T  21512002 gaatgttgttcacacttcactcaatgctaggaaacactactaatttatcaatataactttatcggcagttaactgttgatcaattttaaccggctgcagt 21512101  T
Q  112 taactgcagatggatatttatgtctttttcagatgtgtttca 153  Q
    ||||||| |||||| ||||| ||||||||| | |||||||||    
T  21512102 taactgctgatggacatttacgtctttttctggtgtgtttca 21512143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 28752971 - 28753019
Alignment:
Q  134 tctttttcagatgtgtttcagtcttagttgaagtgtatacatcaatttt 182  Q
    |||||||| ||||| |||||| |||| |||||||||||| |||||||||    
T  28752971 tctttttctgatgtatttcagccttaattgaagtgtatatatcaatttt 28753019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 51380940 - 51381112
Alignment:
Q  9 gaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgac 108  Q
    ||||||| ||||||||| ||||||||||| ||||||| |  ||||||||||||||||| ||||||| ||||||||| | |||| ||||||||| | || |    
T  51380940 gaagaatgttgttcacacttcactcaatgctaggaaacactagtaatttatcaatataacatcatcggtagttaacagtcgatggattttaactggcggc 51381039  T
Q  109 agataactgcagatggatatttatgtctttttcagatgtgtttcagtcttagttgaagtgtatacatcaattttcgt 185  Q
    || |||||    ||||   |||| ||||||||| | |||||||||| |||  |||||||||| ||  ||||||||||    
T  51381040 agttaact----atgggcgtttacgtctttttctggtgtgtttcagccttgtttgaagtgtaaacggcaattttcgt 51381112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 27844736 - 27844642
Alignment:
Q  47 atcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgacagataactgcagatggatatttatgtctttttc 141  Q
    ||||||||||||||||||||   ||||| | |||||||| |||||  ||||||||||||| ||| |||||| ||||||||||||| || ||||||    
T  27844736 atcagtaatttatcaatataatttcatcggcagttaactaccgatgaattttaaccgacggcagttaactgtagatggatatttacgtatttttc 27844642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 31984532 - 31984408
Alignment:
Q  14 atattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgacagata 113  Q
    |||||||||| | ||||||||||| ||||||| | || |||||||  |||||| ||||||  | ||||||| ||||||  |||||||||| || ||| ||    
T  31984532 atattgttcaaacttcactcaatgctaggaaacacca-taatttacaaatataacatcataggcagttaaccgccgatgaattttaaccggcggcagtta 31984434  T
Q  114 actgcagatggatatttatgtctttt 139  Q
    ||||| |||||| |||||||| ||||    
T  31984433 actgctgatggacatttatgtttttt 31984408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 39028104 - 39028253
Alignment:
Q  9 gaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgac 108  Q
    ||||||| ||||||||| |||| |||||| ||| ||| |  |||||||||  |||||| | | ||| | | ||||||| ||||  |||||||||| || |    
T  39028104 gaagaatgttgttcacacttcaatcaatgctagaaaacactagtaatttacaaatataaccttatcggcaattaactgtcgatgaattttaaccggcggc 39028203  T
Q  109 agataactgcagatggatatttatgtctttttcagatgtgtttcagtctt 158  Q
    || ||||||| |||| | ||||| ||||||||| | ||||||||||||||    
T  39028204 agttaactgccgatgaacatttacgtctttttctggtgtgtttcagtctt 39028253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 54524930 - 54525087
Alignment:
Q  17 ttgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgacagataact 116  Q
    ||||||||| |||||||||||||||||||||  ||| |||||  |||||| | ||||| | |||||||||  ||| || |||||||| || ||| |||||    
T  54524930 ttgttcacacttcactcaatgttaggaaatactagttatttactaatataacctcatcggcagttaactgttgatggaatttaaccggcggcagttaact 54525029  T
Q  117 gcagatggatatttatgtctttttcagatgtgtttcagtcttagttgaagtgtataca 174  Q
    ||  || || ||||| |  |||||| | |||||||||| |||  | ||||||||||||    
T  54525030 gccaatagacatttacgattttttctggtgtgtttcagccttcttagaagtgtataca 54525087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 2395906 - 2395836
Alignment:
Q  54 atttatcaatatagcatcatcagtagttaactgccgattga-ttttaaccgacgacagataactgcagatg 123  Q
    ||||| ||||||||| ||||| |||||||||||||||| || ||||||||| |||||| ||||||| ||||    
T  2395906 atttaccaatatagcctcatcggtagttaactgccgatggatttttaaccggcgacagttaactgccgatg 2395836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 48723331 - 48723453
Alignment:
Q  9 gaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgac 108  Q
    ||||||| ||||||||| ||||||||||| || |||| |   |||||||| |||||||   ||||| | || ||||||| |||  ||||||| |||||||    
T  48723331 gaagaatgttgttcacacttcactcaatgctatgaaacactggtaatttaccaatataatctcatcggcagataactgctgatacattttaatcgacgac 48723430  T
Q  109 agataactgcagatggatattta 131  Q
    || ||||||  |||||| |||||    
T  48723431 agttaactgttgatggacattta 48723453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 21610999 - 21611144
Alignment:
Q  9 gaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgac 108  Q
    ||||||| ||||||||| ||||||||||  ||| |||||  ||||||||||||||||| | | ||| |||||||||  |||||  |||||||||||||||    
T  21610999 gaagaatgttgttcacacttcactcaatactagaaaatactagtaatttatcaatataactttatcggtagttaacaaccgatgaattttaaccgacgac 21611098  T
Q  109 agataactgcagatggatatttatgtctttttcagatgtgtttcag 154  Q
    || |||||   |||| | ||||| |||||||||  |||||||||||    
T  21611099 agttaactatcgatgaacatttacgtctttttctaatgtgtttcag 21611144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 33629344 - 33629488
Alignment:
Q  9 gaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgac 108  Q
    ||||||| ||||||||| ||||||||||| ||||||| |  ||||||||| |||||||   |||||| || |||||||| ||||||||||  |||| | |    
T  33629344 gaagaatgttgttcacacttcactcaatgctaggaaacaatagtaatttaccaatataatctcatcaata-ttaactgctgattgatttttgccgatggc 33629442  T
Q  109 agataactgcagatggatatttatgtctttttcagatgtgtttcag 154  Q
    || ||||||  | | || ||||| ||||||||| ||||||||||||    
T  33629443 agttaactgacgctagacatttacgtctttttctgatgtgtttcag 33629488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 33929988 - 33929934
Alignment:
Q  49 cagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccg 103  Q
    ||||||||||||||||||   ||||| |||||||||||||||| |||||||||||    
T  33929988 cagtaatttatcaatatactctcatcggtagttaactgccgatggattttaaccg 33929934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 3445520 - 3445463
Alignment:
Q  9 gaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatata 66  Q
    ||||||| ||||||||| ||||| ||||| |||||||||  |||||||||||||||||    
T  3445520 gaagaatgttgttcacacttcacacaatgctaggaaatactagtaatttatcaatata 3445463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 27176952 - 27177118
Alignment:
Q  17 ttgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgacagataact 116  Q
    ||||| ||| ||||||||||  ||  ||| ||||||||||||| |||||| | ||||| | ||||||||  ||||  ||||||| || || ||| |||||    
T  27176952 ttgtttacacttcactcaatactaaaaaacatcagtaatttattaatataacctcatcggcagttaactatcgatgaattttaatcggcggcagttaact 27177051  T
Q  117 gcagatggatatttatgtctttttcagatgtgtttcagtcttagttgaagtgtatacatcaattttc 183  Q
    |  |||| | ||||| |||||||||  |||||||||| ||||  | |||| ||| ||| ||||||||    
T  27177052 gtcgatgaacatttacgtctttttctaatgtgtttcaatcttgttagaagcgtacacaccaattttc 27177118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 69064 - 68935
Alignment:
Q  9 gaagaatattgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgac 108  Q
    ||||||| ||||||||| ||||||||||| ||||| | |  ||||||||||||||||| ||||||| |||||||| ||  |||  |||||||||||||||    
T  69064 gaagaatgttgttcacacttcactcaatgctaggacacactagtaatttatcaatataacatcatcggtagttaagtg-tgatgaattttaaccgacgac 68966  T
Q  109 agataactgcagatggatatttatgtctttt 139  Q
    || ||||||  ||| || ||||| |||||||    
T  68965 agttaactgtcgatagacatttacgtctttt 68935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 46916075 - 46915909
Alignment:
Q  17 ttgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgacagataact 116  Q
    ||||||||||||||||| ||| ||||||| | |||||||||| |||||||   ||||| | |||||||||| ||| ||||| || |||  |||| |||||    
T  46916075 ttgttcacatttcactcgatgataggaaacaccagtaatttaccaatata-tttcatcggcagttaactgcagatggatttcaatcgaaaacagttaact 46915977  T
Q  117 gcagatggatatttatgtc-tttttcagatgtgtttcagtcttagttgaagtgtatacatcaattttc 183  Q
    |  |||| | ||||| ||| |||||  | |||||||||| |||||||||||| |||||| ||||||||    
T  46915976 gtcgatgaacatttacgtcttttttttggtgtgtttcagccttagttgaagtatatacaacaattttc 46915909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 22023126 - 22023227
Alignment:
Q  17 ttgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattga-ttttaaccgacgacagataac 115  Q
    ||||||||| ||||||||||| | | ||| | |||||||||| | ||||| | ||||| | |||||||||||||| || |||||||||||||||| ||||    
T  22023126 ttgttcacacttcactcaatgctggaaaacaccagtaatttacctatataacctcatcggcagttaactgccgatggatttttaaccgacgacagttaac 22023225  T
Q  116 tg 117  Q
    ||    
T  22023226 tg 22023227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 10315703 - 10315869
Alignment:
Q  17 ttgttcacatttcactcaatgttaggaaatatcagtaatttatcaatatagcatcatcagtagttaactgccgattgattttaaccgacgacagataact 116  Q
    ||||||||| ||||||||||| |  |||| | || |||||||  |||||| | ||||| | ||||||||||||||  ||||||||   || ||  |||||    
T  10315703 ttgttcacacttcactcaatgctgagaaacaccaataatttactaatataacctcatcggcagttaactgccgataaattttaacacgcggcaattaact 10315802  T
Q  117 gcagatggatatttatgtctttttcagatgtgtttcagtcttagttgaagtgtatacatcaattttc 183  Q
    || |||||  ||||| ||||||||| ||| |  ||||| |||||||||||||| |||| ||||||||    
T  10315803 gccgatgggcatttacgtctttttctgatataattcagccttagttgaagtgtctacagcaattttc 10315869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 37283753 - 37283665
Alignment:
Q  94 attttaaccgacgacagataactgcagatggatatttatgtctttttcagatgtgtttcagtcttagttgaagtgtatacatcaattttc 183  Q
    |||||||| | || ||||||||||  |||||||||||||||| ||||| ||||||||||||  ||  |||||||||||| | ||||||||    
T  37283753 attttaacgggcggcagataactgttgatggatatttatgtc-ttttctgatgtgtttcagctttgtttgaagtgtatagaacaattttc 37283665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 37283807 - 37283758
Alignment:
Q  17 ttgttcacatttcactcaatgttaggaaatatcagtaatttatcaatata 66  Q
    ||||||||| ||||||||||| ||||||| |  |||||||||||||||||    
T  37283807 ttgttcacacttcactcaatgctaggaaacacgagtaatttatcaatata 37283758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 5897709 - 5897660
Alignment:
Q  17 ttgttcacatttcactcaatgttaggaaatatcagtaatttatcaatata 66  Q
    ||||||||||||||||| ||| || |||| | ||||||||||||||||||    
T  5897709 ttgttcacatttcactcgatgctaagaaacaccagtaatttatcaatata 5897660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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