View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19895_low_11 (Length: 381)
Name: NF19895_low_11
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19895_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 7068160 - 7067923
Alignment:
| Q |
9 |
gagatgaaccactcatacttgatttccaacactcatacaataattcttataaaatcggtttgtaacccaaaaaagagtatatcattgatcattataaann |
108 |
Q |
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| T |
7068160 |
gagatcaaccattcatacttgatttccaac--tcatacaataattcttataaaatcggtttgtaacccgaaaaagagtatatcattgatcattataattt |
7068063 |
T |
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| Q |
109 |
nnnnnagtctttatcaatttttaacacggtagttggatttttccaatatgaaacaagtatatggtgatatattatataaaataacagttgttagaaagcc |
208 |
Q |
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| T |
7068062 |
tttttagtctttatcaatttttaacacggtagttggatttttccaatatgaaacaagtatatggtgatatattatataaaataacagttgttagaaagcc |
7067963 |
T |
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| Q |
209 |
tctactttatatttaataatatgtagtgtgtaacttgcac |
248 |
Q |
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| T |
7067962 |
tctactttatatttaataatatgtagtgtgtaacttgcac |
7067923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 7067912 - 7067880
Alignment:
| Q |
277 |
cagaaggtgattgcaaaatataacacttaccac |
309 |
Q |
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| T |
7067912 |
cagaaggtgattgcaaaatataacacttaccac |
7067880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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