View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19895_low_12 (Length: 377)
Name: NF19895_low_12
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19895_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 91 - 358
Target Start/End: Complemental strand, 10422380 - 10422102
Alignment:
| Q |
91 |
ttttagattacagctcgatt-ccacacacggaatctccctccagctcatagaaacttttttattttggtacattaatttaatgaagaagaaaaagagaga |
189 |
Q |
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| T |
10422380 |
ttttagattacagctcgatttccacacacggaatctccctccagctcatagaaacttttttattttggtacaataatttaatgaagaagaaaaagagaga |
10422281 |
T |
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| Q |
190 |
aatagtgtgcacgtgtcacaagggtttgtactttct-acaactaaaaataatatacatattttggttgaccgtattacgtgtatggagagtgagtggtgn |
288 |
Q |
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| T |
10422280 |
aatagtgtgcacgtgtcacaagggtttgtactttctaaaaaataattataagatttagagtttggttgaccgtattatgtgtatggagagtgagaggtg- |
10422182 |
T |
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| Q |
289 |
nnnnnnncaagtagtctggtgg----------cacatttatatttggagaagtggggtgtcaatgttcgaaacccgactc |
358 |
Q |
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| T |
10422181 |
tttttttcaagtagtttggtggttaaagttcacacatttaaatttggagaagtggggtgtcagtgttcgaaacccgactc |
10422102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10422470 - 10422427
Alignment:
| Q |
1 |
aacatgtgaggtatttatagactttgcattaatctgagagtgat |
44 |
Q |
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| T |
10422470 |
aacatgtgaggtatttatagactttgcattaatttgagagtgat |
10422427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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