View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19895_low_14 (Length: 342)
Name: NF19895_low_14
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19895_low_14 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 33383308 - 33382966
Alignment:
| Q |
1 |
tcctcttcacagctttttccagtgcatcccattgaacact-atctccctccaatccaacccattttttaactccaacaggtacaccaattttaagtacct |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383308 |
tcctcttcacagctttttccagtgcatcccattgaacacttatctccctccaatccaacccattttttaactccaacaggtacaccaattttaagtacct |
33383209 |
T |
|
| Q |
100 |
cattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccaca |
199 |
Q |
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| T |
33383208 |
cattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaaccacaccttctaaaactgaattccatccaca |
33383109 |
T |
|
| Q |
200 |
atgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383108 |
atgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaat |
33383009 |
T |
|
| Q |
300 |
ccttctggtagccaatcttctccatcttctctgctcctcctca |
342 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
33383008 |
ccttctggtagccaatcttctccatcttctttgcttctcctca |
33382966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 4 - 299
Target Start/End: Original strand, 33390750 - 33391045
Alignment:
| Q |
4 |
tcttcacagctttttccagtgcatcccattgaacactatctccctccaatccaacccattttttaactccaacaggtacaccaattttaagtacctcatt |
103 |
Q |
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| T |
33390750 |
tcttcacagccttctccactgcatcccaatgaactttatcactcacctttccatcccatgttttagctccaacaggtacaccaattttaagtacatcagt |
33390849 |
T |
|
| Q |
104 |
caccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaatga |
203 |
Q |
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| T |
33390850 |
taccaacttctcattataaaattgctcaggagctataggccaagtaatcataggtactccagcagctacactttccaaagttaagttccatccacaatga |
33390949 |
T |
|
| Q |
204 |
gtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaat |
299 |
Q |
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||||||| ||||||||| |||| |||| ||||||||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33390950 |
gtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaat |
33391045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 207
Target Start/End: Original strand, 33401723 - 33401823
Alignment:
| Q |
107 |
caacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtc |
206 |
Q |
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||||||||||||| |||||| ||||| | || |||||||| | |||||||| |||||| |||||||||||| ||| |||||||||||||||||| |
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| T |
33401723 |
caacttctcattgataaattgctcagctgaaagtggccaagtcgccataggtactccagcacacacaccttctaaagttgagttccatccacaatgagtc |
33401822 |
T |
|
| Q |
207 |
a |
207 |
Q |
| |
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| |
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| T |
33401823 |
a |
33401823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 2 - 329
Target Start/End: Original strand, 27688515 - 27688842
Alignment:
| Q |
2 |
cctcttcacagctttttccagtgcatcccattgaacactatctccctccaatccaacccattttttaactccaacaggtacaccaattttaagtacctca |
101 |
Q |
| |
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|||||||||||| || |||| ||||||||||| |||| |||| || || |||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
27688515 |
cctcttcacagccttctccactgcatcccattcaacattatccccaaccttcataacccactttttaactccaacaggtacaccagttttaagtacctca |
27688614 |
T |
|
| Q |
102 |
ttcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaat |
201 |
Q |
| |
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| ||||||||||||||||||||||| || || || ||||||||||||| |||||||| ||||| || || ||||||||||| ||||||||||| |||| |
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| T |
27688615 |
gtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaatcataggtactccagctaccactccttctaaaaccgaattccatccgcaat |
27688714 |
T |
|
| Q |
202 |
gagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaatcc |
301 |
Q |
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| T |
27688715 |
gcgtcacaaatgccccgattgcttcatgttcaagaatcatcacttgtggagaccaacctcttataattagtccttttccttccgttctttcctcgaatcc |
27688814 |
T |
|
| Q |
302 |
ttctggtagccaatcttctccatcttct |
329 |
Q |
| |
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||| |||||||| || |||||||||||| |
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| T |
27688815 |
ttcaggtagccattcatctccatcttct |
27688842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 62 - 299
Target Start/End: Complemental strand, 18989693 - 18989456
Alignment:
| Q |
62 |
ttttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtacc |
161 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||| ||| ||| | ||||||||||| |||||||| |
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| T |
18989693 |
ttttttatctccaacaggtacaccaattttaagtacttcagttaccaacttctcattataaaattcctcaaaagctataggccaagtaatcataggtact |
18989594 |
T |
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| Q |
162 |
ccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctc |
261 |
Q |
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|||||| | |||| ||| ||| | | |||||||||||||||||||||||||||||||| |||| |||| || |||||| ||| | | |||||||| |
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| T |
18989593 |
ccagcagccacactttccaaagttaagttccatccacaatgagtcacaaatgctccaatagctttatgttgaaaaatcaaaagttgaagaggccaacctc |
18989494 |
T |
|
| Q |
262 |
ttataattagtccctttccttccattcttttctcaaat |
299 |
Q |
| |
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||||||||||||| ||||||| |||| ||||||||||| |
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| T |
18989493 |
ttataattagtccttttcctttcattattttctcaaat |
18989456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 19001937 - 19001890
Alignment:
| Q |
252 |
gaccaacctcttataattagtccctttccttccattcttttctcaaat |
299 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
19001937 |
gaccaacctcttataattagtccgtttcctttcatccttttctcaaat |
19001890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 11646 - 11686
Alignment:
| Q |
182 |
aactgaattccatccacaatgagtcacaaatgctccaattg |
222 |
Q |
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|||||||||||| ||||||||||||| |||||| ||||||| |
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| T |
11646 |
aactgaattccaaccacaatgagtcaaaaatgcaccaattg |
11686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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