View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19895_low_16 (Length: 317)
Name: NF19895_low_16
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19895_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 99 - 294
Target Start/End: Original strand, 8796102 - 8796294
Alignment:
| Q |
99 |
caaacacatacttaccctacaatgtttcttacatcatagattggatctaccattctaatacttctaatttgtttatgcgcctttaaatatttatcagtaa |
198 |
Q |
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| T |
8796102 |
caaacacatacttaccctacaatgtttcttacatcatagattggatctaccattctaatacttctaatttgtttatgcgcctttaaatatttatcagtaa |
8796201 |
T |
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| Q |
199 |
cttaaagggtgtatagggtttaaattgaaaaaacaggatctgtcctatttctnnnnnnnngaaacaaactttctattgtagccaataaaatacatc |
294 |
Q |
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| T |
8796202 |
cttaaagggtg--taggttttaaattgaaaaaacaggatctgtcctatttct-gaaaaaagaaacaaactttctattgtagccaataaaatacatc |
8796294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 8795690 - 8795768
Alignment:
| Q |
16 |
atttgggcagtatcacaatgagcaaccaaacatacttaacaaaatcacactgcactataattttaccaaatccaccata |
94 |
Q |
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| T |
8795690 |
atttgggcagtatcacaatgagcaaccaaacataattcacaaaatcacactgcactataattttaccaaatccaccata |
8795768 |
T |
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