View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19895_low_20 (Length: 240)

Name: NF19895_low_20
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19895_low_20
NF19895_low_20
[»] chr3 (10 HSPs)
chr3 (1-219)||(2760301-2760520)
chr3 (2-202)||(2819664-2819865)
chr3 (4-199)||(2791421-2791617)
chr3 (4-209)||(2770160-2770366)
chr3 (5-208)||(2798459-2798663)
chr3 (1-158)||(2808415-2808573)
chr3 (1-170)||(2837435-2837605)
chr3 (1-200)||(2750101-2750301)
chr3 (1-211)||(5413981-5414192)
chr3 (1-170)||(2854645-2854815)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-219)||(4984-5203)
[»] chr1 (1 HSPs)
chr1 (1-148)||(11116585-11116732)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2760520 - 2760301
Alignment:
Q  1 ttccccaaatttttaggaatatgattca-caatgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtttgcccacgaaatgctcca 99  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2760520 ttccccaaatttttaggaatatgattcaacgatgtaccttcaatgtcaagtaccttcaaaatcctagatttcgaacacagtttgcccacgaaatgctcca 2760421  T
Q  100 atgacacacttttgtcaaaaacatgaatagcacggaaatgtgaaatgttagagctcttcaacgcattgttgtggctagtggttattgataggcgtctagt 199  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2760420 atgacacacttttatgaaaaacatgaatagcacggaaatgtgaaatgttagagctcttcaacacattgttgtggctagtggttattgataggcgtctagt 2760321  T
Q  200 tttcccaaccacaagtgatt 219  Q
    ||||||||||||||||||||    
T  2760320 tttcccaaccacaagtgatt 2760301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 2819865 - 2819664
Alignment:
Q  2 tccccaaatttttaggaatatgattcaca-atgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtttgcccacgaaatgctccaa 100  Q
    |||||||||||||||| | ||||||||   ||||||||| |||||||||||||||||||||||  || || |||| ||||||||||||||||||||||||    
T  2819865 tccccaaatttttaggtacatgattcaatgatgtaccttgaatgtcaagtaccttcaaaatccgagactttgaacccagtttgcccacgaaatgctccaa 2819766  T
Q  101 tgacacacttttgtcaaaaacatgaatagcacggaaatgtgaaatgttagagctcttcaacgcattgttgtggctagtggttattgataggcgtctagtt 200  Q
     ||| ||  ||| |||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||  ||||||||||| |||||||||||||||    
T  2819765 cgacccagctttatcaaaaacatgaatagcacgaaaatgtgaaatgttagtgctcttcaacacatcgttgtcactagtggttatagataggcgtctagtt 2819666  T
Q  201 tt 202  Q
    ||    
T  2819665 tt 2819664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 2791617 - 2791421
Alignment:
Q  4 cccaaatttttaggaatatgattcaca-atgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtttgcccacgaaatgctccaatg 102  Q
    |||| ||||||||||||||||||||   ||||||||| ||||||||||||||||||||| || || | |||||||||||| ||||  |||| ||||||||    
T  2791617 cccagatttttaggaatatgattcaatgatgtaccttgaatgtcaagtaccttcaaaatgctagactgcgaacacagtttacccatcaaattctccaatg 2791518  T
Q  103 acacacttttgtcaaaaacatgaatagcacggaaatgtgaaatgttagagctcttcaacgcattgttgtggctagtggttattgataggcgtctagt 199  Q
    |  ||| ||| || ||||||||||||||||| ||||||||| |||||| |||||||||| |||||||| |  |||||| ||| ||||||||||||||    
T  2791517 atccacctttttccaaaacatgaatagcacgaaaatgtgaattgttagtgctcttcaacacattgttgagattagtggatatagataggcgtctagt 2791421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 2770366 - 2770160
Alignment:
Q  4 cccaaatttttaggaatatgattca-caatgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtttgcccacgaaatgctccaatg 102  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| || |  |  |||||||||||  |||  |||| |||||  |    
T  2770366 cccaaatttttaggaatatgattcaacgatgtaccttgaatgtcaagtaccttcaaaatgctaggctgtgaacacagtttatccatcaaattctccatcg 2770267  T
Q  103 acacacttttgtcaaaaacatgaatagcacggaaatgtgaaatgttagagctcttcaacgcattgttgtggctagtggttattgataggcgtctagtttt 202  Q
       ||| ||| || ||||||||||||||| | ||||||||| ||||||  ||||||||| |||||||| | ||||||| ||| |||||||||||||| ||    
T  2770266 gtccacctttttcgaaaacatgaatagcatgaaaatgtgaattgttagtactcttcaacacattgttgagactagtggctatggataggcgtctagtgtt 2770167  T
Q  203 cccaacc 209  Q
     ||||||    
T  2770166 tccaacc 2770160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 2798663 - 2798459
Alignment:
Q  5 ccaaatttttaggaatatgattcaca-atgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtttgcccacgaaatgctccaatga 103  Q
    ||||||||||||||||||  ||||   ||||||||| ||||||||| |||||||| ||||| || |  ||||||||||| ||||  ||||||||||||||    
T  2798663 ccaaatttttaggaatatttttcaatgatgtaccttgaatgtcaagcaccttcaatatcctagactgtgaacacagtttacccatcaaatgctccaatga 2798564  T
Q  104 cacacttttgtcaaaaacatgaatagcacggaaatgtgaaatgttagagctcttcaacgcattgttgtggctagtggttattgataggcgtctagttttc 203  Q
      ||  ||| |||||||||||||| ||||| ||||| | | |||||| |||||||||| |||||||  | | | |||  || ||||||||||||||||||    
T  2798563 ttcatctttttcaaaaacatgaattgcacgaaaatgcgtattgttagtgctcttcaacacattgtttggacaactggcaatagataggcgtctagttttc 2798464  T
Q  204 ccaac 208  Q
    |||||    
T  2798463 ccaac 2798459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 2808573 - 2808415
Alignment:
Q  1 ttccccaaatttttaggaatatgattcaca-atgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtttgcccacgaaatgctcca 99  Q
    ||||||||||||||||||||||||| ||   ||||||||| |||||||| |||||||||||| || || || ||||| || ||  ||| || ||||||||    
T  2808573 ttccccaaatttttaggaatatgatgcaaggatgtaccttgaatgtcaaataccttcaaaatactagactttgaacaaagcttatccatgatatgctcca 2808474  T
Q  100 atgacacacttttgtcaaaaacatgaatagcacggaaatgtgaaatgttagagctcttc 158  Q
    | |   ||| ||| || ||||||||||||||||||||||||||| |||||| |||||||    
T  2808473 acggttcacctttttcgaaaacatgaatagcacggaaatgtgaattgttagcgctcttc 2808415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 2837435 - 2837605
Alignment:
Q  1 ttccccaaatttttaggaatatgattcaca-atgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtttgcccacgaaatgctcca 99  Q
    |||||||||||||||||||||||||||| | | ||||| | |||||||||||||||||| ||||| || |  ||||| | ||| || | |||| ||||||    
T  2837435 ttccccaaatttttaggaatatgattcaaagacgtaccctgaatgtcaagtaccttcaatatcctagagtgtgaacataatttaccaatgaaaggctcca 2837534  T
Q  100 atgacacacttttgtcaaaaacatgaatagcacggaaatgtgaaatgttagagctcttcaacgcattgttg 170  Q
       |  ||| |||  ||||||||||||||||||| ||||||||| |||| |  |||| |||||||||||||    
T  2837535 gcaatccaccttttccaaaaacatgaatagcacgaaaatgtgaattgtttgttctctgcaacgcattgttg 2837605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 2750301 - 2750101
Alignment:
Q  1 ttccccaaatttttaggaatatgattca-caatgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtttgcccacgaaatgctcca 99  Q
    ||||||||||||||||| |||||||||| | | || |||| ||||||||| ||||||||||| || || | |||||| | ||| |||| |||||||||||    
T  2750301 ttccccaaatttttagggatatgattcaacgacgtcccttgaatgtcaaggaccttcaaaattcttgactgcgaacaaactttacccatgaaatgctcca 2750202  T
Q  100 atgacacacttttgtcaaaaacatgaatagcacggaaatgtgaaatgttagagctcttcaacgcattgttgtggctagtggttattgataggcgtctagt 199  Q
    ||||  ||  ||  ||||| |||| |||||| || || ||| || | |||| |||| | ||| |||||||| |  |||||| ||| ||||||||||||||    
T  2750201 atgatccatcttcttcaaacacataaatagcccgaaattgtaaattattagtgctcctgaacacattgttgggattagtggctatagataggcgtctagt 2750102  T
Q  200 t 200  Q
    |    
T  2750101 t 2750101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 5414192 - 5413981
Alignment:
Q  1 ttccccaaatttttaggaatatgattca-caatgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtttgcccacgaaatgctcca 99  Q
    |||||||| |||||||| |||||||||| ||||||||||| ||||||||| ||||||| |||||  ||    ||||| ||| | || | ||||||||||     
T  5414192 ttccccaagtttttagggatatgattcaacaatgtaccttgaatgtcaagaaccttcagaatccgagaccgtgaacaaagtatacctatgaaatgctccg 5414093  T
Q  100 atgacacacttttgtcaaaaacatgaatagcacggaaatgtgaaatgttagagctcttcaacgcattgttgtggctagtggttattgataggcgtctagt 199  Q
      ||  ||| ||| ||||| |||||||||||||| ||||||| | |  ||| |||| | |   |||||||  | ||||||| ||| ||||||||||||||    
T  5414092 gagatccacctttttcaaacacatgaatagcacgaaaatgtggattaatagtgctccttagtacattgtttggactagtggctatagataggcgtctagt 5413993  T
Q  200 tttcccaaccac 211  Q
    ||| ||||||||    
T  5413992 ttttccaaccac 5413981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 2854645 - 2854815
Alignment:
Q  1 ttccccaaatttttaggaatatgattcaca-atgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtttgcccacgaaatgctcca 99  Q
    ||||| ||||| |||||||||| ||||| | | ||||||| |||||||||||||||||| ||||| || |  ||||| | ||| || | |||| ||||||    
T  2854645 ttcccaaaattattaggaatataattcaaagacgtaccttgaatgtcaagtaccttcaatatcctagactgtgaacataatttaccaatgaaaggctcca 2854744  T
Q  100 atgacacacttttgtcaaaaacatgaatagcacggaaatgtgaaatgttagagctcttcaacgcattgttg 170  Q
    |  |  ||| |||  ||||||||||||||||||| ||||||||| |||| |  ||| ||||| ||||||||    
T  2854745 acaatccaccttttccaaaaacatgaatagcacgaaaatgtgaattgtttgctctcatcaacacattgttg 2854815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4984 - 5203
Alignment:
Q  1 ttccccaaatttttaggaatatgattcaca-atgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtttgcccacgaaatgctcca 99  Q
    |||||||||||||| |||||||||||||   ||||||||| |||||||||||||||||||||| | || |  || |||||||| |||| |||||||||||    
T  4984 ttccccaaatttttgggaatatgattcaatgatgtaccttgaatgtcaagtaccttcaaaatcttagactgtgagcacagtttacccatgaaatgctcca 5083  T
Q  100 atgacacacttttgtcaaaaacatgaatagcacggaaatgtgaaatgttagagctcttcaacgcattgttgtggctagtggttattgataggcgtctagt 199  Q
    | ||  ||| ||| |||||||| ||||||||||| ||||||||| | |  | |||||||||| ||||| || | ||||||||||| || |||||||||||    
T  5084 acgatccacctttttcaaaaacgtgaatagcacgaaaatgtgaattatcggtgctcttcaacacattgctgggactagtggttatagacaggcgtctagt 5183  T
Q  200 tttcccaaccacaagtgatt 219  Q
    |||  ||||||||| |||||    
T  5184 ttttacaaccacaattgatt 5203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 11116585 - 11116732
Alignment:
Q  1 ttccccaaatttttaggaatatgattca-caatgtaccttcaatgtcaagtaccttcaaaatcctcgatttcgaacacagtttgcccacgaaatgctcca 99  Q
    ||||||||||||| ||||||| |||||| | |||||||||  || | |||| |||||||||  || || || | ||||| ||| |||| |||| ||||||    
T  11116585 ttccccaaattttcaggaatacgattcaacgatgtaccttgcatat-aagtgccttcaaaactctagactttgcacacaatttacccaggaaaggctcca 11116683  T
Q  100 atgacacacttttgtcaaaaacatgaatagcacggaaatgtgaaatgtt 148  Q
    |  |  ||| ||| |||||||||||||||||||||||||||||| ||||    
T  11116684 agaatccacctttttcaaaaacatgaatagcacggaaatgtgaattgtt 11116732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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