View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19895_low_5 (Length: 485)
Name: NF19895_low_5
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19895_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 24780251 - 24779937
Alignment:
| Q |
13 |
aaaatattggtagatagacgaaataacaaataatccttaaaactcatacacacac----gtgaaataaccagaatttaaaccccaagtcatgacgttcta |
108 |
Q |
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|||| |||| |||||| ||||||||||||||||||| | |||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
24780251 |
aaaaaattgatagataaacgaaataacaaataatccctgaaactcatacacacacacacgtgaaggaaccataatttaaaccctaagtcatgacgttcta |
24780152 |
T |
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| Q |
109 |
tcaaacaactttgatatttttattaattgaactagaacttgttgaacaagaataagattttgaataaactttatacattttatttttcgacacacaaatt |
208 |
Q |
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| T |
24780151 |
tcaaacaattttgatatttttatcaattgaactagaatttgttgaacaaaaataagattttgaataaacttcatacattttattttttgacacacaaatt |
24780052 |
T |
|
| Q |
209 |
atctatccatttatatgcaaaataatttacttatgtacttgaagaaaaaacgtctcccacactcttctcttttccttccttaacactcttcctcaacgtg |
308 |
Q |
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| T |
24780051 |
atctatccatttatatgcaaaataatttacttatgtacttgaagaaaaaacgtctcccacactcttctcttttccttccttaacactcttcctcaacgtg |
24779952 |
T |
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| Q |
309 |
atttggttattaggc |
323 |
Q |
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| T |
24779951 |
atttggttattaggc |
24779937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 409 - 468
Target Start/End: Complemental strand, 24779851 - 24779792
Alignment:
| Q |
409 |
ggcgggaaataaatcatttcacgaatcccgccttaggtttctagaacgttccactatata |
468 |
Q |
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| T |
24779851 |
ggcgggaaataaatcatttcacgaatcccgccttaggtttctagaacgttccactatata |
24779792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 30785019 - 30785065
Alignment:
| Q |
26 |
atagacgaaataacaaataatccttaaaactcatacacacacgtgaa |
72 |
Q |
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| T |
30785019 |
atagacgaaatgacaaataatcattaaaactcacacacacaagtgaa |
30785065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 8017254 - 8017213
Alignment:
| Q |
21 |
ggtagatagacgaaataacaaataatccttaaaactcataca |
62 |
Q |
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| T |
8017254 |
ggtagatagacgaaataataaataattattaaaactcataca |
8017213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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