View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19895_low_6 (Length: 456)
Name: NF19895_low_6
Description: NF19895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19895_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 6918264 - 6917832
Alignment:
| Q |
19 |
acaaaccaccttgtctctcattcatttcttaca-----ccaaaccaaaccatattgtctattctcaaccttcctttcatgttatgtaaaacaaacaaaac |
113 |
Q |
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| T |
6918264 |
acaaaccaccttgtctgtcattcatttcttacatcaaaccaaaccaaaccatattgtctattctcaaccttcctttcatgttatgtaaaacaaacaaaac |
6918165 |
T |
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| Q |
114 |
cttaatttctcttcttttcctttatcctctttattccatccagctccaaagctacaataaatataatttatcatttcttttatgtaactttgcatgagag |
213 |
Q |
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| T |
6918164 |
cttaatttctcttcttttcctttatcctctttattccatccagctccaaagctacaataaatataatttatcatttcttttatgtaactttgcatgagag |
6918065 |
T |
|
| Q |
214 |
gaagtaaggaataa-taactaatcaacattattagcaatgacagggtcatcaagaaaaggacatacattcttggatgaaggaagcgttcatggtagaaga |
312 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6918064 |
gaagtaaggaataaataactaatcaacattattagcaatgacagggtcatcaagaaaaggacatacattcttggatgaaggaagcgttcatggtagaaga |
6917965 |
T |
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| Q |
313 |
tttggtaaattgaaaaaagacgaatttgacggttacaactccgacaaccatcctcgaaaaaacagccctatcaaaacaactgatgcaccccatttagatc |
412 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917964 |
tttggcaaattgaaaaaagacgaatttgacggttacaactccgacaaccatcctcgaaaaaacagccctatcaaaacaactgatgcaccccatttagatc |
6917865 |
T |
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| Q |
413 |
ctcaaatggcatcagataattcacctgatgatg |
445 |
Q |
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| T |
6917864 |
ctcaaatggcatcagataattcaccttatgatg |
6917832 |
T |
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