View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19896_high_11 (Length: 242)

Name: NF19896_high_11
Description: NF19896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19896_high_11
NF19896_high_11
[»] chr2 (12 HSPs)
chr2 (113-227)||(4730682-4730796)
chr2 (20-127)||(4730563-4730671)
chr2 (119-208)||(35243106-35243195)
chr2 (130-180)||(12419537-12419587)
chr2 (130-180)||(12431597-12431647)
chr2 (119-182)||(20105337-20105402)
chr2 (119-156)||(39711724-39711761)
chr2 (133-181)||(39228901-39228949)
chr2 (130-181)||(5136187-5136238)
chr2 (133-180)||(9848112-9848159)
chr2 (130-181)||(18482108-18482159)
chr2 (136-169)||(38002026-38002059)
[»] scaffold0174 (2 HSPs)
scaffold0174 (113-227)||(30562-30676)
scaffold0174 (20-128)||(30443-30552)
[»] chr1 (6 HSPs)
chr1 (113-224)||(2688401-2688512)
chr1 (81-130)||(2688520-2688569)
chr1 (133-180)||(48563257-48563304)
chr1 (133-180)||(50959523-50959570)
chr1 (139-169)||(19757765-19757795)
chr1 (133-163)||(29013825-29013855)
[»] chr7 (5 HSPs)
chr7 (130-178)||(10623350-10623398)
chr7 (133-186)||(10019743-10019796)
chr7 (126-167)||(28302166-28302207)
chr7 (136-173)||(5907018-5907055)
chr7 (133-169)||(27900348-27900384)
[»] chr4 (3 HSPs)
chr4 (107-159)||(21481176-21481228)
chr4 (133-181)||(1745438-1745486)
chr4 (133-168)||(38011672-38011707)
[»] chr8 (3 HSPs)
chr8 (135-180)||(1029736-1029781)
chr8 (133-180)||(41566184-41566231)
chr8 (133-181)||(11954595-11954643)
[»] chr5 (1 HSPs)
chr5 (119-186)||(24099420-24099486)
[»] chr3 (2 HSPs)
chr3 (115-181)||(28159065-28159130)
chr3 (115-169)||(28180530-28180583)
[»] chr6 (3 HSPs)
chr6 (133-169)||(29032701-29032737)
chr6 (133-180)||(8210013-8210060)
chr6 (107-161)||(17459206-17459258)
[»] scaffold0756 (1 HSPs)
scaffold0756 (133-164)||(4094-4125)
[»] scaffold0003 (1 HSPs)
scaffold0003 (115-180)||(353236-353297)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 4730682 - 4730796
Alignment:
Q  113 taaactcgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtcggattataacttgttgtgtttggtggcgtgt 212  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||| |||    
T  4730682 taaacccgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagttctaacgcgtcagattgtaacttgttgtgtttggtggcatgt 4730781  T
Q  213 acgcttgactctctg 227  Q
    |||||||||||||||    
T  4730782 acgcttgactctctg 4730796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 4730563 - 4730671
Alignment:
Q  20 tcttttttccctttccgtatttcttttgtttctgtgttt-gttgttcagagctgagattggtgggtgcagtcttgaccttttgctttcgtttcataaact 118  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| |     
T  4730563 tcttttttccctttcggtatttcttttgtttttgtgttttgttgttcagagctgagattgatgggtgcagacttgaccttttgctttggtttcataatcc 4730662  T
Q  119 cgaaagggt 127  Q
    |||||||||    
T  4730663 cgaaagggt 4730671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 35243106 - 35243195
Alignment:
Q  119 cgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtcggattataacttgttgtgtttggtggc 208  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||||| || |||| | || |||| |||||||||||||||||||||    
T  35243106 cgaaagggtctgtttggttactagcgtaatggactcatccctcgatctgatatgtaacacatcagattgtaacttgttgtgtttggtggc 35243195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 12419587 - 12419537
Alignment:
Q  130 gtttggttactaacgtattggactcatcccacgatctgagatctaacgcgt 180  Q
    ||||||||||||||||||||||||||||||  |||||||| ||| ||||||    
T  12419587 gtttggttactaacgtattggactcatccctagatctgagttcttacgcgt 12419537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 12431647 - 12431597
Alignment:
Q  130 gtttggttactaacgtattggactcatcccacgatctgagatctaacgcgt 180  Q
    ||||||||||||||||||||||||||||||  |||||||| ||| ||||||    
T  12431647 gtttggttactaacgtattggactcatccctagatctgagttcttacgcgt 12431597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 20105337 - 20105402
Alignment:
Q  119 cgaaagggtctgtttggttact--aacgtattggactcatcccacgatctgagatctaacgcgtcg 182  Q
    |||||||||||| |||||||||  ||||||||||||||||| | ||||||||| ||| ||||||||    
T  20105337 cgaaagggtctgattggttactttaacgtattggactcatcactcgatctgagttcttacgcgtcg 20105402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 39711761 - 39711724
Alignment:
Q  119 cgaaagggtctgtttggttactaacgtattggactcat 156  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  39711761 cgaaagggtctgtttggttactaacgtattgaactcat 39711724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 39228901 - 39228949
Alignment:
Q  133 tggttactaacgtattggactcatcccacgatctgagatctaacgcgtc 181  Q
    |||||||||||||||| |||||||||| ||||||||| ||| |||||||    
T  39228901 tggttactaacgtattcgactcatccctcgatctgagttcttacgcgtc 39228949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 5136187 - 5136238
Alignment:
Q  130 gtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtc 181  Q
    |||||| || |||||||||||||||||||| ||||||||| ||| |||||||    
T  5136187 gtttggctattaacgtattggactcatccctcgatctgagttcttacgcgtc 5136238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 9848112 - 9848159
Alignment:
Q  133 tggttactaacgtattggactcatcccacgatctgagatctaacgcgt 180  Q
    |||||||| |||||||||||||||||| ||||||||| ||| ||||||    
T  9848112 tggttactgacgtattggactcatccctcgatctgagttcttacgcgt 9848159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 18482159 - 18482108
Alignment:
Q  130 gtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtc 181  Q
    ||||||||| |||| ||||||||||||||| ||||||||| ||| |||||||    
T  18482159 gtttggttattaacatattggactcatccctcgatctgagttcttacgcgtc 18482108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 38002026 - 38002059
Alignment:
Q  136 ttactaacgtattggactcatcccacgatctgag 169  Q
    |||||||||||||||||||||||| |||||||||    
T  38002026 ttactaacgtattggactcatccctcgatctgag 38002059  T

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Target: scaffold0174 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 30562 - 30676
Alignment:
Q  113 taaactcgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtcggattataacttgttgtgtttggtggcgtgt 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||| |||||     
T  30562 taaacccgaaagggtctgtttggttactaacgtattggactcatcccacgatatgagttctaacgcgtcagattgtaacttgttgtgtttggttgcgtgc 30661  T
Q  213 acgcttgactctctg 227  Q
    | |||||||||||||    
T  30662 aggcttgactctctg 30676  T

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Target: scaffold0174; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 30443 - 30552
Alignment:
Q  20 tcttttttccctttccgtatttcttttgtttctgtgttt-gttgttcagagctgagattggtgggtgcagtcttgaccttttgctttcgtttcataaact 118  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||     
T  30443 tcttttttccctttccgtatttcttttgtttttgtgttttgttgttcagagctgagattggtgggtgcagacttgaccttttgcgttggtttcataaacc 30542  T
Q  119 cgaaagggtc 128  Q
    ||||||||||    
T  30543 cgaaagggtc 30552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 2688512 - 2688401
Alignment:
Q  113 taaactcgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtcggattataacttgttgtgtttggtggcgtgt 212  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||||||||||||||||||| ||||    
T  2688512 taaacccgaaagagtctgtttggttactaacgtattggactcatcccacgatctgagttctaacgcatcagattgtaacttgttgtgtttggtggtgtgt 2688413  T
Q  213 acgcttgactct 224  Q
      ||||||||||    
T  2688412 gtgcttgactct 2688401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 2688569 - 2688520
Alignment:
Q  81 gggtgcagtcttgaccttttgctttcgtttcataaactcgaaagggtctg 130  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  2688569 gggtgcagtcttgaccttttgctttggtttcataaacccgaaagggtctg 2688520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 48563257 - 48563304
Alignment:
Q  133 tggttactaacgtattggactcatcccacgatctgagatctaacgcgt 180  Q
    ||||||||||| |||||||||||||||||||||| || ||| ||||||    
T  48563257 tggttactaacatattggactcatcccacgatctaagttcttacgcgt 48563304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 50959570 - 50959523
Alignment:
Q  133 tggttactaacgtattggactcatcccacgatctgagatctaacgcgt 180  Q
    |||||||| |||||||||||||||||| ||||||||| ||| ||||||    
T  50959570 tggttactgacgtattggactcatccctcgatctgagttcttacgcgt 50959523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 169
Target Start/End: Original strand, 19757765 - 19757795
Alignment:
Q  139 ctaacgtattggactcatcccacgatctgag 169  Q
    |||||||||||||||||||||||||||||||    
T  19757765 ctaacgtattggactcatcccacgatctgag 19757795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 163
Target Start/End: Complemental strand, 29013855 - 29013825
Alignment:
Q  133 tggttactaacgtattggactcatcccacga 163  Q
    |||||||||||||||||||||||||||||||    
T  29013855 tggttactaacgtattggactcatcccacga 29013825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 10623350 - 10623398
Alignment:
Q  130 gtttggttactaacgtattggactcatcccacgatctgagatctaacgc 178  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  10623350 gtttggttactaacgtattggactcatccctcgatctgagttctaacgc 10623398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 10019796 - 10019743
Alignment:
Q  133 tggttactaacgtattggactcatcccacgatctgagatctaacgcgtcggatt 186  Q
    ||||||||||||||||||||||||||| |||| |||| ||| ||||||| ||||    
T  10019796 tggttactaacgtattggactcatccctcgatttgagttcttacgcgtctgatt 10019743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 28302207 - 28302166
Alignment:
Q  126 gtctgtttggttactaacgtattggactcatcccacgatctg 167  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  28302207 gtctatttggttactaacgtattggactcatccctcgatctg 28302166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 5907018 - 5907055
Alignment:
Q  136 ttactaacgtattggactcatcccacgatctgagatct 173  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  5907018 ttactaacgtattggactcatccctcgatatgagatct 5907055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 27900384 - 27900348
Alignment:
Q  133 tggttactaacgtattggactcatcccacgatctgag 169  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  27900384 tggttactaacatattggactcatccctcgatctgag 27900348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 21481228 - 21481176
Alignment:
Q  107 gtttcataaactcgaaagggtctgtttggttactaacgtattggactcatccc 159  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  21481228 gtttcaaaaactcgaaagggtctgtttggttactcacgaattggactcatccc 21481176  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 1745438 - 1745486
Alignment:
Q  133 tggttactaacgtattggactcatcccacgatctgagatctaacgcgtc 181  Q
    ||||||||||||||||||||||||||| | ||||||| ||| |||||||    
T  1745438 tggttactaacgtattggactcatccctcaatctgagttcttacgcgtc 1745486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 38011707 - 38011672
Alignment:
Q  133 tggttactaacgtattggactcatcccacgatctga 168  Q
    ||||||||||||||||||||||||||| ||||||||    
T  38011707 tggttactaacgtattggactcatccctcgatctga 38011672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 1029781 - 1029736
Alignment:
Q  135 gttactaacgtattggactcatcccacgatctgagatctaacgcgt 180  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  1029781 gttactaacgtattggactcatcccacgatctgagttcttacgcgt 1029736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 41566184 - 41566231
Alignment:
Q  133 tggttactaacgtattggactcatcccacgatctgagatctaacgcgt 180  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  41566184 tggttactaacgtattagactcatcccacgatctgagttcttacgcgt 41566231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 11954643 - 11954595
Alignment:
Q  133 tggttactaacgtattggactcatcccacgatctgagatctaacgcgtc 181  Q
    |||||| ||||||||||||||||||||  |||||||| ||| |||||||    
T  11954643 tggttattaacgtattggactcatccctggatctgagttcttacgcgtc 11954595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 24099420 - 24099486
Alignment:
Q  119 cgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtcggatt 186  Q
    |||||||||||||| ||||| |||||||||| ||||||||| ||||||||| | | ||||||||||||    
T  24099420 cgaaagggtctgtt-ggttattaacgtattgaactcatccctcgatctgagtttttacgcgtcggatt 24099486  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 28159130 - 28159065
Alignment:
Q  115 aactcgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgtc 181  Q
    ||||| ||||||| ||||||||||||||| ||||| ||||||||| |||||||||||| ||| ||||    
T  28159130 aactcaaaagggt-tgtttggttactaacatattgaactcatccctcgatctgagatcaaacacgtc 28159065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 28180583 - 28180530
Alignment:
Q  115 aactcgaaagggtctgtttggttactaacgtattggactcatcccacgatctgag 169  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||| | |||||||    
T  28180583 aactcaaaagggt-tgtttggttactaacgtattgaactcatccctcaatctgag 28180530  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 29032701 - 29032737
Alignment:
Q  133 tggttactaacgtattggactcatcccacgatctgag 169  Q
    ||||||||||||||||||||||||||| |||||||||    
T  29032701 tggttactaacgtattggactcatccctcgatctgag 29032737  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 8210013 - 8210060
Alignment:
Q  133 tggttactaacgtattggactcatcccacgatctgagatctaacgcgt 180  Q
    ||||||||||| ||||||||||||||| ||||||||| ||| ||||||    
T  8210013 tggttactaacttattggactcatccctcgatctgagttcttacgcgt 8210060  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 17459258 - 17459206
Alignment:
Q  107 gtttcataaactcgaaagggtctgtttggttactaacgtattggactcatcccac 161  Q
    |||||| |||| |||||||||||||  | ||||||||||||||||||||||||||    
T  17459258 gtttcaaaaacccgaaagggtctgt--gattactaacgtattggactcatcccac 17459206  T

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Target: scaffold0756 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 164
Target Start/End: Original strand, 4094 - 4125
Alignment:
Q  133 tggttactaacgtattggactcatcccacgat 164  Q
    ||||||||||||||||||||||||||||||||    
T  4094 tggttactaacgtattggactcatcccacgat 4125  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 353297 - 353236
Alignment:
Q  115 aactcgaaagggtctgtttggttactaacgtattggactcatcccacgatctgagatctaacgcgt 180  Q
    ||||||||||||||||    |||||| || ||||||||||||||| ||||||||| ||| ||||||    
T  353297 aactcgaaagggtctg----gttactgacatattggactcatccctcgatctgagttcttacgcgt 353236  T

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