View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19896_high_2 (Length: 665)

Name: NF19896_high_2
Description: NF19896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19896_high_2
NF19896_high_2
[»] chr3 (1 HSPs)
chr3 (17-657)||(12234370-12235010)


Alignment Details
Target: chr3 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 17 - 657
Target Start/End: Complemental strand, 12235010 - 12234370
Alignment:
Q  17 aaacattacctggagatgttttggttttggctgattttaaacctgaatcaacgaatgatttgcagagatttggaagaatgtggagttttttgacagttgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12235010 aaacattacctggagatgttttggttttggctgattttaaacctgaatcaatgaatgatttccagagatttggaagaatgtggagttttttgacagttgt 12234911  T
Q  117 gaggacagaagatgagaatgagagtgataaaatggatgctgtttgtcttaaagtcaaggcatcaaaagatcttgatcttgatgagttaagatacaaacct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12234910 gaggacagaagatgagaatgagagtgataaaatggatgctgtttgtcttaaagtcaaggcatcaaaagatcttgatcttgatgagttaagatacaaacct 12234811  T
Q  217 ctttttattgttttcttgacaaatgttgggtcttctagaaaagcatggagtggtctccacatgactaatggtaacttgaagcttgtcaaacaaatcttgt 316  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  12234810 ctttttattgttttcttgacaaatgttgggtcttatagaaaagcatggagtggtctccacatgactgatggtaacttgaagcttgtcagacaaatcttgt 12234711  T
Q  317 gcaacggcgatgatgaggtaacaaacttgatttctagtagtgttacttaaggtttattgtagcattgtactgttatattatctcttctagctaactaaac 416  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12234710 gcaacggcgatgacgaggtaacaaacttgatttctagtagtgttacttatggtttattgtagcattgtactgttatattatctcttctagctaactaaac 12234611  T
Q  417 ttcatttctatcatcattattcagttttagtagagcatcttaatgtaatacttgtatgatttcagcattaatgtatatcttcttgtttttcgttaatatt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  12234610 ttcatttctatcatcattattcagttttagtagagcatcttaatgtaatacttgtatgatttcagcatttatgtatatcttctcgtttttcgttaatatt 12234511  T
Q  517 atattcacctaaaacctacaatttatgttgaaggcgtgtccaagtatctatctaacattcacacggtatcgacacttgtgatttcatacactcacttcta 616  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12234510 ctattcacctaaaacctacaatttatgttgaaggcgtgtccaagtatctatctaacattcacacggtatcgacacttgtgatttcatacactcacttcta 12234411  T
Q  617 ttttctcaacctattattggagtctttccggtgtctgtgct 657  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  12234410 ttttctcaacctattattggtgtctttccggtctctgtgct 12234370  T

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