View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19896_high_5 (Length: 370)
Name: NF19896_high_5
Description: NF19896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19896_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 3856493 - 3856168
Alignment:
| Q |
19 |
atcagattcatccgaggaatgtagacaacctcaccagcatgtgcaccaccaataacacgtgcacaaatcacatttttccccaaagagacaataatcaaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3856493 |
atcagattcatccgaggaatgtagacaacctcaccagcatgtgcaccaccaataacacgtgcacaaatcacatttttccccaaagagacaataatcaaac |
3856394 |
T |
|
| Q |
119 |
gcgttccattgcagagaccagatgcttgatcaacgttgcgaagcaacatgacaggaactccaaccttcaaacataattattattttttctaannnnnnnn |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3856393 |
gcgttccattgcagagaccagatgcttgatcaacgttgcgaagcaacatgacatgaactccaaccttcaaacataattattattttttctaa-ttttttt |
3856295 |
T |
|
| Q |
219 |
natgtgtgtgactaaatagagtgaccaaatacttgtgtccattcaagaattgctccttttcaaaagcccnnnnnnnnnactttcaaaatcaacgaagaag |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3856294 |
tatgtgt-------------gtgaccaaatacttgtgtccattcaagaattgctccttttcaaaagccc--tttttttactttcaaaatcaacgaagaag |
3856210 |
T |
|
| Q |
319 |
gaggatcagctcatggtttcttaaactatactccgtcctatg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3856209 |
gaggatcagctcatggtttcttaaactatactccgttctatg |
3856168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 46471525 - 46471350
Alignment:
| Q |
19 |
atcagattcatccgaggaatgtagacaacctcaccagcatgtgcaccaccaataacacgtgcacaaatcacatttttccccaaagagacaataatcaaac |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46471525 |
atcagattcatccgaggaatgtaggaaacctcaccagcatgtgtaccaccaataacacgtgcacaaatcacatttttccccaaggagacaataatcaaac |
46471426 |
T |
|
| Q |
119 |
gcgttccattgcagagaccagatgcttgatcaacgttgcgaagcaacatgacaggaactccaaccttcaaacataa |
194 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46471425 |
gtgttccattgcagagaccagatgcttgatcaacgttgcgaagcaacatgacaggaactccaaccttcaaacataa |
46471350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 33446299 - 33446133
Alignment:
| Q |
22 |
agattcatccgaggaatgtagacaacctcaccagcatgtgcaccaccaataacacgtgcacaaatcacatttttccccaaagagacaataatcaaacgcg |
121 |
Q |
| |
|
|||||||||||||| |||||| |||| || ||| |||| ||||||||||| ||| ||||| || |||||||| ||||| || | | | | ||||| | |
|
|
| T |
33446299 |
agattcatccgaggtatgtaggcaacttcgccatcatgcaaaccaccaataatacgcgcacatatgacatttttgcccaatgaaatgacagttaaacggg |
33446200 |
T |
|
| Q |
122 |
ttccattgcagagaccagatgcttgatcaacgttgcgaagcaacatgacaggaactccaaccttcaa |
188 |
Q |
| |
|
| |||||||| ||||||| | |||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
33446199 |
taccattgcacagaccagccgattgatcaacgttgcgaagcaacataacaggaacaccaaccttcaa |
33446133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 43377706 - 43377752
Alignment:
| Q |
223 |
tgtgtgactaaatagagtgaccaaatacttgtgtccattcaagaatt |
269 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||||| |||||||| |
|
|
| T |
43377706 |
tgtgtgactaaatagagggtccaaattcttgtgtccatccaagaatt |
43377752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University