View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19896_low_1 (Length: 685)
Name: NF19896_low_1
Description: NF19896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19896_low_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 105 - 685
Target Start/End: Original strand, 4286173 - 4286750
Alignment:
| Q |
105 |
attcgtctgagaataatatacacctccatagagcattcaagttttttgataaaaatcaatctgggtatattgaacttgaggataattaagtaagctaact |
204 |
Q |
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| T |
4286173 |
attcatctgagaatgatatacacctccatagagcattcaagttttttgataaaaatcaatctcggtatattgaacttgaggataattaagtaagctaact |
4286272 |
T |
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| Q |
205 |
cttcatttaagacaagactctgttatcattcccttggcccatcatggcataaccttagcnnnnnnnn-tcacataaaagtagaggtctgttcaattttca |
303 |
Q |
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| T |
4286273 |
cttcatttaagacaagactctgttatcattcccttggcccatcatggcataaccttagcaaaaaagaatcacataaacgtagaggtctgttcaattttca |
4286372 |
T |
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| Q |
304 |
ctgggcataacagtaccatgttctacaagttcgatagaggtctcatctgcaagcaaatacataagttacaatcactcaccaccaagttattatattgaag |
403 |
Q |
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| T |
4286373 |
ccgggcataacagtaccatgttctactagttcgatagaggtctcatctgcaagcaaatacataagttacaatcactcaccaccaagttattatattgaag |
4286472 |
T |
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| Q |
404 |
attgaaccaaggacataagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgcattgctatataaaaggtctc |
503 |
Q |
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| T |
4286473 |
attgaaccaaagacataagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgcattgctatataaaaggtctc |
4286572 |
T |
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| Q |
504 |
aaaacataaaactggtttaataaacagcaacatttatttatgaccacctgtttgatcatgacatacaattaattcatcagtccaccccaaagcacttgag |
603 |
Q |
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| T |
4286573 |
aaaacataaaactggtttaataaacagcaacatttatttatgaccacctgtttgatcatgacatac----aattcatcagtccaccccaaagcacttgag |
4286668 |
T |
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| Q |
604 |
aaggagttgatccaaacaaactgaattctacgtcaattcgaaacatcaaaaaatcataaatttgactacatgcaataaacta |
685 |
Q |
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| T |
4286669 |
aaggagttgatccaaacaaactgaattctacgtcaatttgaaacataaaaaaatcataaatttgactacatgcaataaacta |
4286750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4284583 - 4284670
Alignment:
| Q |
1 |
cgcgaaattgtaaagaaacttgttattgggagtagtgctattagtacactctttgttttgnnnnnnngctaatacaccttcttattgttgaaa |
93 |
Q |
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| T |
4284583 |
cgcgaaattgtgaagaaacttgttatttggagtagtgctattagtacactctttttttt-----tttgctaatacaccttcttattgttgaaa |
4284670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 21387211 - 21387149
Alignment:
| Q |
124 |
acacctccatagagcattcaagttttttgataaaaatcaatctgggtatattgaacttgagga |
186 |
Q |
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| T |
21387211 |
acacctccaaagagcattccaattttttgataaaaacgaatctgggtttattgaacttgagga |
21387149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 17165434 - 17165498
Alignment:
| Q |
420 |
aagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgca |
484 |
Q |
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| T |
17165434 |
aagattgacattatcaaggaaatctacttaactaattagtgtgttacaagaacaatgttcatgca |
17165498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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