View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19896_low_13 (Length: 217)

Name: NF19896_low_13
Description: NF19896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19896_low_13
NF19896_low_13
[»] chr8 (15 HSPs)
chr8 (18-202)||(35423221-35423405)
chr8 (110-191)||(35418660-35418741)
chr8 (111-151)||(35419159-35419199)
chr8 (114-193)||(35419063-35419142)
chr8 (111-156)||(35422987-35423032)
chr8 (111-156)||(35423113-35423158)
chr8 (109-194)||(35423138-35423223)
chr8 (111-191)||(35423014-35423094)
chr8 (21-72)||(35419144-35419195)
chr8 (18-72)||(35418925-35418979)
chr8 (18-84)||(35419042-35419108)
chr8 (120-191)||(35418772-35418846)
chr8 (110-157)||(35418633-35418680)
chr8 (109-162)||(35418968-35419021)
chr8 (111-151)||(35418943-35418983)
[»] chr1 (3 HSPs)
chr1 (89-193)||(31240079-31240183)
chr1 (18-82)||(31240214-31240278)
chr1 (111-184)||(31240498-31240571)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 35423221 - 35423405
Alignment:
Q  18 atgtggatttcctagatcaaatggaagatgatgattttctacaggaattggaagagtatcattttggactgcaaaatatggatttggcaacggaattgga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35423221 atgtggatttcctagatcaaatggaagatgatgattttctacaggaattggaagagtatcattttggactgcaaaatatggatttggcaacggaattgga 35423320  T
Q  118 agatgatgatttgctagaggaattggaagaagatcattttgagcaatatccttgtaatgataatgatcaacaaaatgatcatttg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35423321 agatgatgatttgctagaggaattggaagaagatcattttgagcaatatccttgtaatgataatgatcaacaaaatgatgatttg 35423405  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 35418660 - 35418741
Alignment:
Q  110 gaattggaagatgatgatttgctagaggaattggaagaagatcattttgagcaatatccttgtaatgataatgatcaacaaa 191  Q
    ||||||||||| |||||||| |||  ||||||| |||||||||||||||||||  |||||  |||| |||||||||||||||    
T  35418660 gaattggaagaagatgattttctactggaattgcaagaagatcattttgagcagaatcctcataattataatgatcaacaaa 35418741  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 35419159 - 35419199
Alignment:
Q  111 aattggaagatgatgatttgctagaggaattggaagaagat 151  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35419159 aattggaagatgatgatttgctagaggaattggaagaagat 35419199  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 35419063 - 35419142
Alignment:
Q  114 tggaagatgatgatttgctagaggaattggaagaagatcattttgagcaatatccttgtaatgataatgatcaacaaaat 193  Q
    ||||||||||| || ||||| | |||||||||||||||||||||| ||| ||||||  |||| ||| |||||||||||||    
T  35419063 tggaagatgataatctgctacaagaattggaagaagatcattttgggcagtatcctcataattatattgatcaacaaaat 35419142  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 35422987 - 35423032
Alignment:
Q  111 aattggaagatgatgatttgctagaggaattggaagaagatcattt 156  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||    
T  35422987 aattggaagatgatgatttgctagagaaattggaagaagatgattt 35423032  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 35423113 - 35423158
Alignment:
Q  111 aattggaagatgatgatttgctagaggaattggaagaagatcattt 156  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||    
T  35423113 aattggaagatgatgatttgttagaggaattggaagaagatgattt 35423158  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 35423138 - 35423223
Alignment:
Q  109 ggaattggaagatgatgatttgctagaggaattggaagaagatcattttgagcaatatccttgtaatgataatgatcaacaaaatg 194  Q
    |||||||||||| |||||||||||| ||||||  ||||||||||  |||||||  |||| | ||||| || |||||||||||||||    
T  35423138 ggaattggaagaagatgatttgctacaggaatcagaagaagatcgatttgagcggtatcttcgtaattatcatgatcaacaaaatg 35423223  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 35423014 - 35423094
Alignment:
Q  111 aattggaagatgatgatttgctagaggaattggaagaagatcattttgagcaatatccttgtaatgataatgatcaacaaa 191  Q
    |||||||||| |||||||||||| ||||||  ||||||||||   ||||||| |||| | ||||| |||||||||||||||    
T  35423014 aattggaagaagatgatttgctacaggaatcagaagaagatcgacttgagcagtatcttcgtaattataatgatcaacaaa 35423094  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 35419144 - 35419195
Alignment:
Q  21 tggatttcctagatcaaatggaagatgatgattttctacaggaattggaaga 72  Q
    ||||||| ||||||||| |||||||||||||||| ||| |||||||||||||    
T  35419144 tggatttgctagatcaattggaagatgatgatttgctagaggaattggaaga 35419195  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 35418925 - 35418979
Alignment:
Q  18 atgtggatttcctagatcaaatggaagatgatgattttctacaggaattggaaga 72  Q
    |||||||||| ||||||||| ||||||||||||||||| || |||||| ||||||    
T  35418925 atgtggatttgctagatcaattggaagatgatgattttgtagaggaatgggaaga 35418979  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 35419042 - 35419108
Alignment:
Q  18 atgtggatttcctagatcaaatggaagatgatgattttctacaggaattggaagagtatcattttgg 84  Q
    |||||||||| ||||||||| ||||||||||| || | ||||| |||||||||||  ||||||||||    
T  35419042 atgtggatttgctagatcaactggaagatgataatctgctacaagaattggaagaagatcattttgg 35419108  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 35418772 - 35418846
Alignment:
Q  120 atgatgatttgctagaggaattgg---aagaagatcattttgagcaatatccttgtaatgataatgatcaacaaa 191  Q
    ||||||||||| ||||||||||||   |||||||||  |||||||| |||| | ||||| |||||||||||||||    
T  35418772 atgatgatttgttagaggaattgggagaagaagatcgatttgagcagtatcttcgtaattataatgatcaacaaa 35418846  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 35418633 - 35418680
Alignment:
Q  110 gaattggaagatgatgatttgctagaggaattggaagaagatcatttt 157  Q
    |||||||||| ||||||||||||| | ||||||||||||||| |||||    
T  35418633 gaattggaaggtgatgatttgctacatgaattggaagaagatgatttt 35418680  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 35418968 - 35419021
Alignment:
Q  109 ggaattggaagatgatgatttgctagaggaattggaagaagatcattttgagca 162  Q
    ||||| |||||| |||||||  ||| | ||||||||||||||||||||||||||    
T  35418968 ggaatgggaagaagatgattcactacatgaattggaagaagatcattttgagca 35419021  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 35418943 - 35418983
Alignment:
Q  111 aattggaagatgatgatttgctagaggaattggaagaagat 151  Q
    |||||||||||||||||||  ||||||||| ||||||||||    
T  35418943 aattggaagatgatgattttgtagaggaatgggaagaagat 35418983  T

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Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 31240183 - 31240079
Alignment:
Q  89 caaaatatggatttggcaacggaattggaagatgatgatttgctagaggaattggaagaagatcattttgagcaatatccttgtaatgataatgatcaac 188  Q
    |||||||||||||||| | | |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  || | ||||| ||||||    
T  31240183 caaaatatggatttggtagcagaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatagttataataatcaac 31240084  T
Q  189 aaaat 193  Q
    |||||    
T  31240083 aaaat 31240079  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 31240278 - 31240214
Alignment:
Q  18 atgtggatttcctagatcaaatggaagatgatgattttctacaggaattggaagagtatcatttt 82  Q
    ||||| |||| ||||||||||||||||||||| |||||||||| ||| ||||||| |||||||||    
T  31240278 atgtgaatttgctagatcaaatggaagatgattattttctacaagaactggaagaatatcatttt 31240214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 31240571 - 31240498
Alignment:
Q  111 aattggaagatgatgatttgctagaggaattggaagaagatcattttgagcaatatccttgtaatgataatgat 184  Q
    |||||||||| ||||||||||||  |||| | ||||||||| |||||||||| ||||||| |||| ||||||||    
T  31240571 aattggaagaagatgatttgctattggaactagaagaagattattttgagcagtatccttataattataatgat 31240498  T

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