View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19896_low_4 (Length: 374)
Name: NF19896_low_4
Description: NF19896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19896_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 4287068 - 4286721
Alignment:
| Q |
19 |
actctgacctggatgacataaattggtttgaactttgaatattagttagtgttgtttggatatgtttgctctaatgtttgtaactgaagcttcttaaaat |
118 |
Q |
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| T |
4287068 |
actctgaactggatgacataaattggtttgaacttcgaatattagttagtgtttcttggatatgtttgctctaaagtttgtaattgaagcttcttataat |
4286969 |
T |
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| Q |
119 |
atatatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatattgatagcgtgctttcattcctaagcataaaaagaa |
218 |
Q |
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| T |
4286968 |
atatatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatattgatagcgtgctttcattcctaagcataaaaagaa |
4286869 |
T |
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| Q |
219 |
acattgattatcttgactaaataaaacaatctaatcttgaatgaaaacctgtgtgttattattgtttcctcctctcaaaattctgttcatacattactgg |
318 |
Q |
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| T |
4286868 |
acattgattatcttgactaaataaaacaatctaatcttgaatgaaaacctgtgtgttattattgtttcctcctctcaaaattctgttcatacattactgg |
4286769 |
T |
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| Q |
319 |
ggagtagttaccaagtgctagtttattgcatgtagtcaaattgatgat |
366 |
Q |
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| T |
4286768 |
ggagtagttgccaagtgctagtttattgcatgtagtcaaatttatgat |
4286721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 19972224 - 19972170
Alignment:
| Q |
169 |
tactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacatt |
223 |
Q |
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| T |
19972224 |
tactagctctaatattgatagcatcacttcattcccaagcataaaaagaaacatt |
19972170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 19972306 - 19972245
Alignment:
| Q |
122 |
tatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatat |
183 |
Q |
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|||| |||||||||||||| ||||| |||||||| |||||| | |||||||| |||||||| |
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| T |
19972306 |
tataatttcttcatgctttgatcaaccatgttttgagaaaacgcatttactagctctaatat |
19972245 |
T |
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