View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19896_low_6 (Length: 369)
Name: NF19896_low_6
Description: NF19896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19896_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 354
Target Start/End: Original strand, 11113590 - 11113924
Alignment:
| Q |
20 |
caaccatcatcggcagcttcatatatgtcactgattgcattagattcgacagtgcctatgttgtgggattgttgtgcaggtttgtcagtcgacctagtaa |
119 |
Q |
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| T |
11113590 |
caaccatcatcggcagcttcatgtatgtcactgattgcattagattcaacagtgcctatgttgtgggattgttgtgcaggtttgtcagttgacctagtaa |
11113689 |
T |
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| Q |
120 |
tgagcattttacgaaattatggtgcgaggaagaaaatggtttagtcgggaggtctgctagttggtgacttgttgcatgagagaaacattgagttgcttgg |
219 |
Q |
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| T |
11113690 |
tgagcattttacgaaattatggttcgaggaagaaaatggtttagtcgggaggtctgccaattggtgacttgttgcatgagagaaacattgagttgcttgg |
11113789 |
T |
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| Q |
220 |
cttctagcaggtcaggtaccaaatgataatttacgatcaagagttttatgtaggaatgaaatgaaggattattacatcaataagttgtctgagtaggttt |
319 |
Q |
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| T |
11113790 |
ctgctagcaggtcacgtgccaaatgataatttacgatcaagagtttcatgtaggaatgaaatgaagggttattacatcaataagttgtctgagtaggttt |
11113889 |
T |
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| Q |
320 |
taggtgtatcaatcaattgaacactgatttctagc |
354 |
Q |
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| T |
11113890 |
taggtgtatcaatcaattgaacactgatttctagc |
11113924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 40836092 - 40836040
Alignment:
| Q |
74 |
cctatgttgtgggattgttgtgcaggtttgtcagtcgacctagtaatgagcat |
126 |
Q |
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| T |
40836092 |
cctatgttgtagggttgttgtgcaggtttgtcagtagacctactaatgagcat |
40836040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 8718217 - 8718304
Alignment:
| Q |
33 |
cagcttcatatatgtcactgattgcattagattcgacagtgcctatgttgtgggattgttgtgcaggtttgtcagtcgacctagtaat |
120 |
Q |
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| T |
8718217 |
cagcctcatgtatgtcattgattgcactagacccgacattgactaggtcgtgggaatgttgtgcaggtttgtcagtagacctaataat |
8718304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 4540265 - 4540309
Alignment:
| Q |
83 |
tgggattgttgtgcaggtttgtcagtcgacctagtaatgagcatt |
127 |
Q |
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| T |
4540265 |
tgggaatgttgtgcaggtttgtcgatagacctagtaatgagcatt |
4540309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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