View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19896_low_7 (Length: 350)
Name: NF19896_low_7
Description: NF19896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19896_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 1625112 - 1625439
Alignment:
| Q |
8 |
tgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttc |
107 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1625112 |
tgagatgaaaaattgtgttttcaactagcttcaaacaatcaccatgaaccgttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttc |
1625211 |
T |
|
| Q |
108 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1625212 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
1625311 |
T |
|
| Q |
208 |
tagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgaggctatggagaaaattgaag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1625312 |
tagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctattttgctcgaggaaggtccttttcttgatgaggctatggagaaaattgaag |
1625411 |
T |
|
| Q |
308 |
ataagaaaacgagcataaacaatgtttt |
335 |
Q |
| |
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||| ||||||||||||||| |||||||| |
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| T |
1625412 |
atacgaaaacgagcataaataatgtttt |
1625439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 1608105 - 1608432
Alignment:
| Q |
8 |
tgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttc |
107 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
1608105 |
tgagatgaaaaattgtgttttcaaatagcttcaaacaatcaccatgaaccgttttatgcacaaatgagttttgttgttgttgagaattttcttgtgcttc |
1608204 |
T |
|
| Q |
108 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1608205 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
1608304 |
T |
|
| Q |
208 |
tagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgaggctatggagaaaattgaag |
307 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
1608305 |
tagtgtttgcatggctttggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgaggctattgagaaaattgatg |
1608404 |
T |
|
| Q |
308 |
ataagaaaacgagcataaacaatgtttt |
335 |
Q |
| |
|
||||||||| |||||||||||||||||| |
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| T |
1608405 |
ataagaaaaagagcataaacaatgtttt |
1608432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 1631595 - 1631922
Alignment:
| Q |
8 |
tgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttc |
107 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
1631595 |
tgagatgaaaaattgtgttttcaaatagcttcaaacaatcaccatgaaccgttttatgcaccaatgagttttgttgttgttgagaatttgcttgtgcttc |
1631694 |
T |
|
| Q |
108 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1631695 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
1631794 |
T |
|
| Q |
208 |
tagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgaggctatggagaaaattgaag |
307 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |
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| T |
1631795 |
tagtgtttgcatggctttggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgaggctgttgagaaaattgatg |
1631894 |
T |
|
| Q |
308 |
ataagaaaacgagcataaacaatgtttt |
335 |
Q |
| |
|
||||||||| |||||||||||||||||| |
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| T |
1631895 |
ataagaaaaagagcataaacaatgtttt |
1631922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 10818947 - 10818623
Alignment:
| Q |
8 |
tgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttc |
107 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || |||||||| |
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| T |
10818947 |
tgagatgaaaaattgtattttcatatagcttcaaacaatcaccatgaaccgttttatgcaccgatgagttttgttgttg---agaattttcatgtgcttc |
10818851 |
T |
|
| Q |
108 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
207 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10818850 |
tttttgcatggtaagagcttggtttaaggctaattgaacaagcatttccctgaattcaattctatgtttgattttgaaatgattgttcatttgtgttgtg |
10818751 |
T |
|
| Q |
208 |
tagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgaggctatggagaaaattgaag |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| |
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| T |
10818750 |
tagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgagactattgagaaaatggaag |
10818651 |
T |
|
| Q |
308 |
ataagaaaacgagcataaacaatgtttt |
335 |
Q |
| |
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||||||||| ||||| ||| ||||||| |
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| T |
10818650 |
ataagaaaaagagcacgaaccatgtttt |
10818623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 18786053 - 18786380
Alignment:
| Q |
8 |
tgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttc |
107 |
Q |
| |
|
||||||||||| |||||||||||| |||||| ||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
18786053 |
tgagatgaaaaattgtgttttcaaatagcttgaaacaatcagcatgaaccgttttatgcacggatgagttttgttgttgttgagaattatcttgtgcttc |
18786152 |
T |
|
| Q |
108 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
207 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
18786153 |
tttttgcatggtaagagcttggtttaaggctaatttaacaagcatttccctgaattcaactctatgtttgattttgaagtgattgttcatttgtgttgtg |
18786252 |
T |
|
| Q |
208 |
tagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgaggctatggagaaaattgaag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
18786253 |
tagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgaggctattgagaaaattgaag |
18786352 |
T |
|
| Q |
308 |
ataagaaaacgagcataaacaatgtttt |
335 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
18786353 |
ataagaaaaagagcataaacaatgtttt |
18786380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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